| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1852 |
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| Symbol | |
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| ID | 4173037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2240904 |
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| End bp | 2242820 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054861 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_661426 |
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| Protein GI | 109898171 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACACC TTATTCTTTT AGGACTTCTT TTTTATCTAG GCATGAATAG CAAGGTCAAT
GCATTGACAA TATCGCCGTT ATTCTCAGAC CATATGGTAT TGCAGCGAGA AAAACCTGTT
CGAATTTGGG GTGAAGCACC TGCAGCCCAA AAAATCACAG TTAGTTTATT GGGGCAACAC
TACCTTACCC AATCGGATCA CAATGGTGAT TGGGAAATCG TGTTGCCAGC GCACGATAAA
GCCGGGCCTT TTACGCTAAC AGTTGAGGCT GATGAATCAA AAACCCTACA TGATGTGTAT
TACGGCGAAG TATGGATAGC CAGCGGACAA TCCAACATGG AGTGGAAGTT AAAAGGAGAT
GTTGTTGGCA ATCAACAAGA AATCATTACG GCAAATCGGC CTCTCATTCG CTTTTTCGAT
ATACCCGATA CAGTTGCTGC CACTAAACAG CGTCACTTAC CTGATAGCCA TTGGCAGGTC
GCTTCGCCCC ACACCGTTGG TTATTTTTCT GCGGTTGCCT GGTTTTTTGC TCGAAAACTA
CAACAGCAAG AAGATGTTGC TGTGGGCATT ATCGAGAGCA ATTGGGGCGG CACACCGGCT
GAATCTTGGA TTGATTTGGA CGTTGTCGCT GCCACGCCAG GGTATGCCGA AAAGAGTGCA
AAGGTTAAAG CACAGCACAA CTGGCCCAAA ATACTTGCTG ATAACAAAGC GAAGAACGTA
AAAAAATGGC AACGGATAGA CGATCTCGAA GGGGCAAAGC GACAAGAAGC TAACGGATTA
AATTATGACG ATAGCCATTG GCAAAACATA GAATTGCCCA ACAAAACGCC GTTGCATCAT
TTCGTTTGGC TACGCAAAGA GTTCACGTTG ACTAATCTAC CCAACTCTCC CATCACGTTA
AGTTTCGGCG ATATCGTGCA GAACGCTTTT ATCTTTATTA ACGGCCAACA CTTAGCGAGC
GAAGACTGGA AGACCCATGA GTCAGTTCAC GCTATACCCA CAGCATTGTT GCGACAAGGC
ACAAACATTA TCACGCTGCG TGTTAATAGC GACTGGGATA ATCGAGTGAT TGTCGGTAAA
AAAGGGCAAA TATTTTTAGA CATAGACGGC TCAAAAATCG ACCTCTCTTC ACACTGGCGG
TTCAATAACA GCATCGAAGC TCCGATGCCT AAAGTGACCA ATTACAGCTT TACCCCAGGC
TTTGTGTACA ATGCGATGAT CTACCCATTA CTGCCTTTTA CCACCCAAGG CGTGATTTGG
TATCAAGGTG AAAGCAACAT CAACAAGCAC GAGTATTACC ACACCCTTTT TAGCAACTTA
ATCGTTAACT GGCGTGAGCG AGCTCAAGCT CCTGAATTGC CATTCTTTTT CGTACAAATA
TCCGCTTATC TTCCACCAAG TGAATTGCAG CCTGATAGCA AATGGGCTTA CCTGCGAGAT
GCCCAGCGAC AAACCTTATC AGTACCGAAT ACCGCAATGG CGGTGTCAAT AGACGTTGGC
AGTGCTGACG ATTTACACCC CAAGCAAAAA CGCCAAGTCG CAGAGCGTTT GTGGCGCCAA
GCCGCATTCA AGATATACGG GCATAGCCTG GTGACAAGTG GCCCCGACTT TGTGCGCTCA
AATACTAATC AAGGCGCAAT TAAGCTTGAA TTTAACAACG CCGAGGGACT CAGAACGACT
GACAATACCC CATTAAAAGG CTTTATTATT GCCGGCGCTA ACAAAGTATT TCGTAAGGCG
CTTGCGCACA TTGAAGGCGC AACAGTCATC GTTTCTCACC CAGAGATTAA CAAGCCCGTT
GCAGTGCGTT ACGCCTGGGC CAATAACCCT ATTGCCAACC TTACAAATAA TGAAAACTTA
CCTGCGGTGC CCTTTAGAAC AGACGACTGG CTTGAAGGTG ATGTCAGCGC AAATTAG
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| Protein sequence | MRHLILLGLL FYLGMNSKVN ALTISPLFSD HMVLQREKPV RIWGEAPAAQ KITVSLLGQH
YLTQSDHNGD WEIVLPAHDK AGPFTLTVEA DESKTLHDVY YGEVWIASGQ SNMEWKLKGD
VVGNQQEIIT ANRPLIRFFD IPDTVAATKQ RHLPDSHWQV ASPHTVGYFS AVAWFFARKL
QQQEDVAVGI IESNWGGTPA ESWIDLDVVA ATPGYAEKSA KVKAQHNWPK ILADNKAKNV
KKWQRIDDLE GAKRQEANGL NYDDSHWQNI ELPNKTPLHH FVWLRKEFTL TNLPNSPITL
SFGDIVQNAF IFINGQHLAS EDWKTHESVH AIPTALLRQG TNIITLRVNS DWDNRVIVGK
KGQIFLDIDG SKIDLSSHWR FNNSIEAPMP KVTNYSFTPG FVYNAMIYPL LPFTTQGVIW
YQGESNINKH EYYHTLFSNL IVNWRERAQA PELPFFFVQI SAYLPPSELQ PDSKWAYLRD
AQRQTLSVPN TAMAVSIDVG SADDLHPKQK RQVAERLWRQ AAFKIYGHSL VTSGPDFVRS
NTNQGAIKLE FNNAEGLRTT DNTPLKGFII AGANKVFRKA LAHIEGATVI VSHPEINKPV
AVRYAWANNP IANLTNNENL PAVPFRTDDW LEGDVSAN
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