| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1771 |
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| Symbol | |
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| ID | 4172019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2125371 |
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| End bp | 2126459 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054781 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_661346 |
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| Protein GI | 109898091 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCGCGC TTCAATTTGG TCGTAGCAGA TTGTTTTGGG TCTGCGTTTT ACTGGCTATA
TTACTGTTTT TTACCCATGG AGAAATAGCC CTTTCATCGG CGTTTAACCG CTATCTACCG
CTAATATTCT TGGTCATACT CGGTTATTTG AGTTGCGCTA AAGACAGTGG GTTTTCTGCT
TACAACTTGG TTATCACCTT GGCGAAGATT TTTGTCGTCG CCATCGTCAG CTATTTGGTG
CTGGAGTACA TTCCTGCGGT TACCCAAAAT AGCCTAAGTC CAATTTATAC GTTCGCCAAT
CATATTGACC CACGTTTAAA CGCCTTGTAT TCGCCATTTG AGTGGTTAGT CGTGATATTT
ACCCTCGCAT TATGCTTTGT GCGTTTTATT TTGATCTCAG ATAATAACCA TGGCGCTTTA
CTTCTCGCGG TGGTGCTTAT CGCAATGATG CCCGCTTATG CAACGTTTGA ATTACACAAT
GTATTGGCGT TGGTCTTAGC CACCAGCTTT TTGTACGCCA TGCTAAAAGA CAGCTTTAAT
ATGGCTTTCA AGGATGAGCT TACGTCTATC CCTTCACGAA GAGCCTTAAT GCAATACGTC
AATACGCTGG GGCGAAAATA TGTGGTGGTG ATGGCGGATA TCGACTACTT CAAAAAATTT
AACGATACCT ACGGCCATGA CGTCGGCGAC GAAGTCCTTA GATTAGTCGC CAGTCGCTTA
AACAAAGTGG GCGGTGGCGG AAAAGCGTTT CGCTTTGGCG GCGAAGAATT CATTTTGATT
TTCCCTCGTA AATCACCACA ACAAGCGTTG CCCTTTGTAG AACAAATACG CCAAATGATC
GCAGATTACC CTATCGCCTT ACGGGATAAG CCTCGGCCAA AGAAACGTCC TAAAGCCGCC
GCAGGGAAAG GCTCTACATC AAAAAATAGT CAAGGAAAAA CGGTTAAAAT CACTGCTAGT
TTTGGTGTTG CAAAGCGAAG CAGTCAGTTC AGCCAATTTA GCGATATCAT GAAACAAGCA
GATATTGCCC TCTATGCCGC CAAAAAAGCA GGACGTAATT GCGTTCAATT GGCAAAACAA
CCTGAGTAG
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| Protein sequence | MIALQFGRSR LFWVCVLLAI LLFFTHGEIA LSSAFNRYLP LIFLVILGYL SCAKDSGFSA
YNLVITLAKI FVVAIVSYLV LEYIPAVTQN SLSPIYTFAN HIDPRLNALY SPFEWLVVIF
TLALCFVRFI LISDNNHGAL LLAVVLIAMM PAYATFELHN VLALVLATSF LYAMLKDSFN
MAFKDELTSI PSRRALMQYV NTLGRKYVVV MADIDYFKKF NDTYGHDVGD EVLRLVASRL
NKVGGGGKAF RFGGEEFILI FPRKSPQQAL PFVEQIRQMI ADYPIALRDK PRPKKRPKAA
AGKGSTSKNS QGKTVKITAS FGVAKRSSQF SQFSDIMKQA DIALYAAKKA GRNCVQLAKQ
PE
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