| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1769 |
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| Symbol | |
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| ID | 4172017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2122548 |
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| End bp | 2123942 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054779 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_661344 |
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| Protein GI | 109898089 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.128605 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCCATTA TGTTGCTTGT TATGGCGATT GCGGTAGCGA TTAGCGGTTA CTTAACGTTG
TCCGACTCGG TAGAAGAACA AAGCCGACTG CAGCAGCAAT CCATGTCTCC AGCTTTTGAT
TTAGTCACGC AGGAGTTGGT TAAGCCGCTG CACACTGCAC AAATACTTGC CAATACCCAA
ACCTTGCGCC GATTGATGAA TGCTCAAATC ATCGATGACA AGGCGATACT CGATTTAGTC
AAGCGTATGT CCATGGACTA CAACATGGAC TTTTTTGTTG CCAGTGAAAA CAGTCGCAAA
CAATATAACG CCAATGGCAG CACACTAGAG TTAAAAGAAG GCGAAGTTGA ATGGTATTTT
CGCGTTAAGG AACAAACTCA CAATGTGGCA GCAGCGTTAG GTAACAGACA AGATATTCAC
ATTTATTTTG ACGTGAAAGT ATTCAATGAT CAGGGTGCAT TTCTCGGGTT TATTGGGGTG
GGTAAACGCT TAAAAACGTT CTTGGACGCA TTTGATAGCT ACAAAGATGC TTTCGGTTAC
GATTTCGTGT TTGTGGATAA TAATCAAGAT GTTGTACTGG CATCAGATCC TGACCTATTG
GCTGATGGAA AACGTATTCT GTCAGTTGAG CAGCTATCTT GGTTTCAAGC ATTGACCGCA
GAACAAAAAT TATTGCCAAG CTTGAATAAT ATCATCGTTA AGACCCCTGA TTATATCAAC
CTCATCGCAC AGATAGACCT TAAGGCTTTG CACTGGAAGC TCTACCTTCT TACTCCGCTA
TCATCACGTA AAACCGCCAG CACCGATGCA TACACCAGCC ATACCTCGTT TGTTTTGTTG
ATTATTTTTG TGGTTTTTGT GACAGCTCAT GTCATTATTC GTTTTTTTGA GCGCGAGTCG
GCTAAAAAAC ATCAGCTTGA TCCTCTTACT CAATTACATA ATCGTGAATA TGTGCAATGG
CGTTTTGACA AAATAGTCAG AGCCAATCAA GAAGCCAGTT TAATTATGGT CGATGTGGAC
AATTTTAAAC GTATCAATGA TTCCCGCGGG CATAATGTAG GCGATAAAGT GTTGGTAGAA
TTTGCGGTGT TACTGCAAAG TGAATTACGT GAGCACGATG CGATAGCCCG CTGGGGCGGC
GAAGAGTTTG TTATTTTATT GCCCGCGACA AAACTTGAGA CAGCCAAAGC GATTGCCCAG
CGCACCTGCA CGCTAATTGC TGCTCAACCG ATTGCACTTC AGGATGAAGC TGATTTAGCG
ATTTCAGCCA GCTTTGGCGT TACCTATGCC GTGAAAGCAC GTTCATTAGA GAGAATGGTA
AAAGTCGCAG ATGACGCATT ATATGAGGCT AAGCACGCTG GTAAAAATTG CGTACGTGTT
CATAAAATGA ATTAG
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| Protein sequence | MPIMLLVMAI AVAISGYLTL SDSVEEQSRL QQQSMSPAFD LVTQELVKPL HTAQILANTQ
TLRRLMNAQI IDDKAILDLV KRMSMDYNMD FFVASENSRK QYNANGSTLE LKEGEVEWYF
RVKEQTHNVA AALGNRQDIH IYFDVKVFND QGAFLGFIGV GKRLKTFLDA FDSYKDAFGY
DFVFVDNNQD VVLASDPDLL ADGKRILSVE QLSWFQALTA EQKLLPSLNN IIVKTPDYIN
LIAQIDLKAL HWKLYLLTPL SSRKTASTDA YTSHTSFVLL IIFVVFVTAH VIIRFFERES
AKKHQLDPLT QLHNREYVQW RFDKIVRANQ EASLIMVDVD NFKRINDSRG HNVGDKVLVE
FAVLLQSELR EHDAIARWGG EEFVILLPAT KLETAKAIAQ RTCTLIAAQP IALQDEADLA
ISASFGVTYA VKARSLERMV KVADDALYEA KHAGKNCVRV HKMN
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