| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1646 |
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| Symbol | |
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| ID | 4174075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1962017 |
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| End bp | 1962970 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054656 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_661222 |
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| Protein GI | 109897967 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATACAT CGAACACATC AAACACAACT GTTTCTAGCA TTCGCTTAAA CAAATTTATT
AGCGACTCAG GTTTCTGCTC TCGTCGCGAA GCAGATAAAT TGATAGACAG CCAACGCGTG
ACGATCAATG GCGTTATTCC TGAATTAGGC ACTAAAGTGT TGTCTGGGGA TGAAGTGCGC
GTTGACGGAA ACTTGATTAA AGCGAGTGCC GAGAATAAGT CTGACAGAGT GTATTTGGCA
TACCATAAAC CTGTCGGGAT TACGTGCACG ACTGAGCGCC ACGTCAAAGG GAATATTATC
GATGCCATCG GTCATCCCGA GCGCATTTTT CCCATTGGCC GATTAGACAA ACCTTCGGAA
GGTTTAATTT TTTTGACCAG TGACGGTGAC ATAGTTAACA AAATTTTGCG CGCTGAAAAT
GCCCATGACA AAGAGTACAT AGTGACGGTG GACCGACCGT TGACAGAGCG TTTTATTCAC
GCCATGGGAG CCGGAGTACC TATACTCGAC ACGGTGACTA AGCCCTGTAC GGTAACAATG
CAGAGTAAAT TCGTATTTCG TATTATTTTA ACCCAAGGGT TAAATAGGCA AATTCGCCGT
ATGTGCGAAT ACTTAGGTTA CGGCGTAACC AAGTTAAAAC GCAGCCGTAT TATGTCAATT
CGTTTAGCGG GGCTAAAGGT AGGGCAGTGG CGAAATTTAA CCCCTGATGA AATGCGTGAA
ATTAGTGACG CTGTTGAGGG CTCAACCAAA ACAGCACTGA AAACCGATCA GAAAATAGCA
GCTAACGTTA CCGATAAAAA TGCCCCAAAG ACTGAGCCAA CCCGCTCTTC CAAGCGCAGT
CATCATCGAG GGATCAAGTC CCAAGTGGGG GAGGCAAAAC ACGGAAGTAG ACGTCAAGCG
ACAAACAACA CCGCACCGGC CACGCCGAGC CGAGGACGCA AACCTAAGGC GTAA
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| Protein sequence | MNTSNTSNTT VSSIRLNKFI SDSGFCSRRE ADKLIDSQRV TINGVIPELG TKVLSGDEVR
VDGNLIKASA ENKSDRVYLA YHKPVGITCT TERHVKGNII DAIGHPERIF PIGRLDKPSE
GLIFLTSDGD IVNKILRAEN AHDKEYIVTV DRPLTERFIH AMGAGVPILD TVTKPCTVTM
QSKFVFRIIL TQGLNRQIRR MCEYLGYGVT KLKRSRIMSI RLAGLKVGQW RNLTPDEMRE
ISDAVEGSTK TALKTDQKIA ANVTDKNAPK TEPTRSSKRS HHRGIKSQVG EAKHGSRRQA
TNNTAPATPS RGRKPKA
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