| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1637 |
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| Symbol | |
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| ID | 4174066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1950112 |
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| End bp | 1952187 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054647 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_661213 |
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| Protein GI | 109897958 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGTGT CAGATTTAAA CGTGCAGCCA GGGAGCGCTA CCTATTTAGG TGCCGTGCTC
GACGAAAATG GTTGTAATTT TGCCGTGCAT TGTCCGAACG CTGAGCTGGT TCAGCTGTGT
TTGTTTAGCA GCGAAGATGA GGCAGAAATT GCGGTTATTG ACGTGCCCGC TAAAACGGGC
AAAGTCTGGC ACTGCTATAT TGAAGGTATC CAAGCGGGGC AGTTGTACGG CTACAGAACA
TCTGGTGGCA ACAAAGAAGC CACTGGTTTT CGCTTTATGC CGGAAAAGCT GTTAATCGAT
CCGTACGCTA AAAAGTTGAG TCGGCCGATG GTTTGGGATG CGAAGCTATA CTCTGGCGAC
AGTCAGAAGA TGGTTGCCAA AAGCGTGGTC GTTGCAAATT CAGCATGGCA AGACCGTCCA
GCAAAGCCCA ATACGCCTTT GGATCACACT GTGCTTTACG AGGCTCATGT AAAAGGCATG
ACGGCACAGC ACCCGAATAT TCCATCCGAG CTAAAAGGGA CGTATTTAGG CATGTGCCAG
CCTAGCGTGA TTAAGCATTT ACAAGATTTG GGGATCAGTG CCGTTCAATT AATGCCAGTG
GCGGCCTTCA TGCCTGAGCC TTACATTACG AATAAAGGCC TAACCAATTA TTGGGGCTAC
AACCCGATAA ACTATTTCAG TCCGGAACCA AGATATGCTG TAAATGACGC TATTGGTGAA
TTTAAAACCA TGGTGGATAG TTATCATGAG GCGGGCATCG AAATCATATT AGATGTGGTG
TTTAATCATA CGGCAGAAGG CGGTTTAGAC GGCCCAGTCT TGTCTTTTAA AGGGTTTGAT
AACTCGTCTT TCTATTTATT TGAACGCAAT GAATACGGGG CTATTGATTA TACCAAGTTC
GTAAATAATT CTGGCTGTGG TAACAGTGTC AACACGGCTT TTCCGTATGT CCTCAAAATG
GTCATGGATG CATTACGCTA CTGGGTACAG GAAATGGGAG TGGATGGATT CCGCTTTGAT
TTGGCTGCCA GCTTAGGTCG CGATCCTTAT GAGTTTTCAG CCTTATCAGG TTTCTTTAGA
ACGATACGTC AAGATCCTGT GTTAATTGGC TGCAAGTTAA TTGCTGAGCC TTGGGATATA
GGGCATGGTG GATATCGTTT GGGGCAGTTC CCGTCTAACT GGCTTGAATG CAATGACAAA
TATCGAGATA CCGTACGCGC ATTTTGGCGA GGAGATAAAG GCACCACCAG TGATTTTGCC
ACCCGTTTAC TAGGCTCAAG AGATGTATTC CCCAAAGAAA GCCGCTCTAT TTTAACCTCT
GTAAACAACG TGAGCTACCA CGATGGTTTT ACCTTGCATG ATATGGTGAG TTATCAAGAA
CGCCATAATG AAGCAAATGG TGAGCAAAAC CGTGATGGTC ACGGACATAA TTTGTCCGCC
AATTACGGCG TCGAAGGTCC AACGACAGAT CCGAAAATCA TTGCTATCCG CGAACGGCAG
AAGCGTAATT TGTTCACCAC CTTGTTATTA TCTCAAGGTA TACCTCATGT ATTGGGTGGG
GATGAACTAA GTCGTACTCA ACAAGGTAAC AATAATGCCT ATTGCCAAGA TAATCCTATT
AGTTGGCTTG ATTGGAACTT AGACGCTACC CAGCAAAAGT TTTTATCCTT TTGCCAACAC
GTAATTGATA TTCGCAAGCA AAGCGTGCTG TTGCACCACT TGCAGCTTCA AGACGACAAT
TTTGACTTAT CCCACAATGT GGCAAAAATT TATTGGTATC GCCCAGACGG AGCTCGTAAA
TTAGAAGATG ATTGGCACGA CCCTGATAAT CAATGTTTTG CTGTTGAACT GCGCGGGGAA
GAATATGCAA CCGGTGAAAC GACTGAACAC TGGTTAATCG TGTTCAACGC CAGTGACCAT
GATGTTAAGT TCAACTGCCC AACTTACGAG GCTAATCAAC GTTGGAAGTT AGTACTTGAT
ACGCGTTATG CCCAGTTTAG TGAACAACCT GAAGTTGTGG TTCAAAATTG CTACAAACAA
GCCAGTAATA GCATTTGTTT GTTCAACGCC ATCTAG
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| Protein sequence | MTVSDLNVQP GSATYLGAVL DENGCNFAVH CPNAELVQLC LFSSEDEAEI AVIDVPAKTG
KVWHCYIEGI QAGQLYGYRT SGGNKEATGF RFMPEKLLID PYAKKLSRPM VWDAKLYSGD
SQKMVAKSVV VANSAWQDRP AKPNTPLDHT VLYEAHVKGM TAQHPNIPSE LKGTYLGMCQ
PSVIKHLQDL GISAVQLMPV AAFMPEPYIT NKGLTNYWGY NPINYFSPEP RYAVNDAIGE
FKTMVDSYHE AGIEIILDVV FNHTAEGGLD GPVLSFKGFD NSSFYLFERN EYGAIDYTKF
VNNSGCGNSV NTAFPYVLKM VMDALRYWVQ EMGVDGFRFD LAASLGRDPY EFSALSGFFR
TIRQDPVLIG CKLIAEPWDI GHGGYRLGQF PSNWLECNDK YRDTVRAFWR GDKGTTSDFA
TRLLGSRDVF PKESRSILTS VNNVSYHDGF TLHDMVSYQE RHNEANGEQN RDGHGHNLSA
NYGVEGPTTD PKIIAIRERQ KRNLFTTLLL SQGIPHVLGG DELSRTQQGN NNAYCQDNPI
SWLDWNLDAT QQKFLSFCQH VIDIRKQSVL LHHLQLQDDN FDLSHNVAKI YWYRPDGARK
LEDDWHDPDN QCFAVELRGE EYATGETTEH WLIVFNASDH DVKFNCPTYE ANQRWKLVLD
TRYAQFSEQP EVVVQNCYKQ ASNSICLFNA I
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