Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1612 |
Symbol | |
ID | 4173866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1917817 |
End bp | 1920624 |
Gene Length | 2808 bp |
Protein Length | 935 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054622 |
Product | ABC transporter related |
Protein accession | YP_661188 |
Protein GI | 109897933 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAACGT CAGATTCTGC GCCATTGCTT GCAAGCTTGC AGGGAATCAA TCATAGGTAT GGCGATGTAC GAGCGCTAAA TGACATCACG TTGGATATTC CTGCCGGCAT GATGGTGGGC CTTCTCGGGC CCGACGGCGT CGGAAAGTCG ACATTATTAG GGCTTATTTC TGGGGCCCGA AAATTACAAG ACGGCCAATT GCAGGTATTA AATGGAGACA TGCGCTCATC AGTCCACCGT AAAAAGGTCG GCCCTAAAAT CGCGTATTTG CCCCAAGGTC TTGGAAAAAA CCTATACGCT GATTTGAGCG TAGAAGAAAA CTTGGATTTT TTTGCTAAGT TATTTGGTCA AACATCGCAA GAACGTGCTT TACGCATCAC GAAGCTCACT AAAGCCACCG GACTTGAATC ATTTTTGCAC CGTCCGGCAG GGAAATTATC CGGTGGTATG AAGCAGAAAC TGGGGTTGTG CTGCTCTCTT ATTCACGATC CAGACCTGCT GATCCTCGAT GAACCAACGA CTGGGGTCGA CCCCTTATCT CGACGTCAGT TTTGGCAACT TATTGCGCAA ATTCGCTCAC AAAGGCATCA AATGAGTGTT GTTGTGTCCA CCGCGTATAT GGATGAAGCG GAAGAATTCG ATTGGCTTGT TGCTATGGAT GCGGGCAAAG TTCTTGCTTC TGGTAAACCA CAAGCTCTAA AAACCTCTAC CGGCACTGAT AATCTCGAAA GTGCCTTTGT GGCGTTACTC CCACCAGAAA AACGAGGAAA TACACAAAAG CTCGTTATTC CTCCACTTGA AGTATCAACC GAAAAACCCG CGATTATCGC CAAGGGTATC ACCCGCAAGT TTGACGACTT TGTGGCCGTG GATGATGTAA GTTTTGAAAT AAAAGCAGGA GAGATTTTCG GCTTTTTAGG CTCCAATGGA TGTGGAAAAA CCACGACCAT GAAAATGCTT ACGGGTTTGT TGCCGATATC CTCAGGCAAA GCGTTTCTGT TTGGTAAAGA AGTTGACGCG AGTGATATGC TAACCCGCAT GAGGGTGGGG TTTATGTCCC AAGCGTTTTC TTTGTACACC GAGCTGACAG TGTATGAAAA CTTATTATTA CATGCTCGTT TGTTCCATAT ATCCAAAGAG AAAACAGCAC AGAGAATTCG TACACTGGTA ACACGGTTTG ATTTACAATC GCAGTTGCAT ACCAAAGCCC AGTCATTGCC CCTTGGGATC CGTCAACGTC TTTCACTTGC TGTTGCCGTT ATTCATGAGC CTGAAATGCT CATTCTAGAC GAGCCGACCT CGGGGGTAGA TCCTGTTGCT CGGGATGTAT TTTGGCGTTT ATTAGTGGAG TTATCACGCA GAGATAAAGT CACTATTTTT ATATCCACTC ATTTTATGAA TGAGGCCCTA AGGTGCGATC GCATATCGCT TATGCATGCT GGAAAGGTAT TAGTGTATGA CGAGCCTAAG CACCTTGTTG CCGCTAAACA CGCGTCTACA TTAGAAGAAG CCTTTATTGG CTATTTAGAG GAAGCCATCG GGGAAAAAGA AGCACCTGAG GACGAAGAAC CGAACGTGCC CTTGACCAAC ATTCCTTCTG AACCCTCGGC GTCGCTACTG GAGCCGCTAG AGGGGGCTTC AAATGGGCCC GCAAATACGA AAAATACCGC AACAGATAGT GTTTTCAGTC TTAAACGTAT GCTCGCTTTT AGCTACCGTG AAATCATGGA AGTGATGCGC GACCCAGTGC GCTTAACATT TGCTTTTATC GGTAGTGCAT TGCTGTTGCT CGTGGTTTCC TATGGTATAT CTCTTGATGT AGAGGATTTG ACCTACGCGG CCTATGACAA TGACCGTACC CCCCAAAGTC GCGAGTATCT GAGCCATTTT GAGGGCTCGA GGTATTTTAT TGAAAAGCCG AGTATTCAAA GTGAAGATGA TCTGCAAAGG CGTATGCAGT CGAATGAAAT TACCTTGGCG CTGGAAATTC CTGCTGGTTT TGGTCGCTCC CTGATTAGAG GTGAAGCCCC CTCTGTTTCT GCTTGGATCG ACGGTGCGAA TACCACGCGG GCGGGTACCA TTGAAGGTTA TGTGTCGGGT GTGCATGTTG CGTATTTAAC CCAGCTCTTT GCTGAGCAAG GTTATGACAT AGACGATTAC GCGAATGTAG ACCTTCAACC TAGGTACCGT TATAACCCGA CCTTTGAAAC GATTTTTTCT ATGGGGCCTA AAACCCCAGC CATGTTGTTG TTATTGTTTC CTGCCATATT GATGGCTGTC AGTATGGCGC GGGAAAAGGA GATTGGCACA ATAACCAATT TCTTTGTTAC GCCGACCACG CGTTTTGAGT TTTTATTGGG TAAACAGCTG CCTTATATCG TTATCGGTAT GATTAATTTT GTGACCTTAA CCCTGCTGGT GGTCTACCTG CTCAAAGTGC CACTAACTGG AAGTGTGACG GGGTTGATGC TCGGCGCCTT CTTTTATGTC TTTGCAGCAA CGGGCTTTGG TTTATTGGTT TCCTCGATCA CCAACACGCA AGTGGCTGCG GTGTTTGCTA CGGCCATTTT AACCCTGATG CCTACCGTAA TGTTTTCCGG CATGATCCAA CCTACTTCTA CTCTGGAGGG GGGAGGGTAT ATTATTGGTA CGTTATGGCC AGCCACCTAT TACATGCACC TGAGCGTTGC TGCATTTACC AAGGGACTAA ATGTGTGGCA GTTGATGAAT GATATATATG TTCTTGCTAT TTTTGGGCCC GTTTTTGTGG TGGTGACTGC GTTGTTTCTT AAAAAGCAGG AGGCCTAG
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Protein sequence | MATSDSAPLL ASLQGINHRY GDVRALNDIT LDIPAGMMVG LLGPDGVGKS TLLGLISGAR KLQDGQLQVL NGDMRSSVHR KKVGPKIAYL PQGLGKNLYA DLSVEENLDF FAKLFGQTSQ ERALRITKLT KATGLESFLH RPAGKLSGGM KQKLGLCCSL IHDPDLLILD EPTTGVDPLS RRQFWQLIAQ IRSQRHQMSV VVSTAYMDEA EEFDWLVAMD AGKVLASGKP QALKTSTGTD NLESAFVALL PPEKRGNTQK LVIPPLEVST EKPAIIAKGI TRKFDDFVAV DDVSFEIKAG EIFGFLGSNG CGKTTTMKML TGLLPISSGK AFLFGKEVDA SDMLTRMRVG FMSQAFSLYT ELTVYENLLL HARLFHISKE KTAQRIRTLV TRFDLQSQLH TKAQSLPLGI RQRLSLAVAV IHEPEMLILD EPTSGVDPVA RDVFWRLLVE LSRRDKVTIF ISTHFMNEAL RCDRISLMHA GKVLVYDEPK HLVAAKHAST LEEAFIGYLE EAIGEKEAPE DEEPNVPLTN IPSEPSASLL EPLEGASNGP ANTKNTATDS VFSLKRMLAF SYREIMEVMR DPVRLTFAFI GSALLLLVVS YGISLDVEDL TYAAYDNDRT PQSREYLSHF EGSRYFIEKP SIQSEDDLQR RMQSNEITLA LEIPAGFGRS LIRGEAPSVS AWIDGANTTR AGTIEGYVSG VHVAYLTQLF AEQGYDIDDY ANVDLQPRYR YNPTFETIFS MGPKTPAMLL LLFPAILMAV SMAREKEIGT ITNFFVTPTT RFEFLLGKQL PYIVIGMINF VTLTLLVVYL LKVPLTGSVT GLMLGAFFYV FAATGFGLLV SSITNTQVAA VFATAILTLM PTVMFSGMIQ PTSTLEGGGY IIGTLWPATY YMHLSVAAFT KGLNVWQLMN DIYVLAIFGP VFVVVTALFL KKQEA
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