| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1507 |
|---|
| Symbol | |
|---|
| ID | 4172956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 1811470 |
|---|
| End bp | 1812735 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054516 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_661083 |
|---|
| Protein GI | 109897828 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCAG TAACAGAATC AAGTGACAGC CCAATATCCA ATGAGGGCAA ACGAATGGGA
CATCCTATGC ACTGGATAAC CGTTTTTATC GCCATGATGT GTTTGTTAAT TTCAAACGGC
ATGGTGATCA CCGGCATTAC GGCATTCGAC AGTGCCATGC TCACTGAATT CAGCAATTGG
TCCCGTGGTG ATTTGAAACT GCGCGGCTTG ATCACATTAG CGCTCACCGG CGTGCTAGCG
CCCTTTGTTG GTATTTTAAT CGATAAAATT GGGGTGAAAT TTTTGGTCAT GGTCGGTGCT
ATCGTGCTTA GTCTGTGCTT CTATGCTTAC GGTAATATCA GAGATATCTC TGATCTGTAT
TTGATACACG CAGCCTTTTC GATTGTGCTG CTGGCGTGTG GCCTAAACGT GGCCGTTATC
TTGGTGTCAA ACTGGTTCGT AAAATTACGC GGCACTGCCA TTGGCATTGC GGTGGTCGGG
ACGTCACTTG GCGGTGCCGT ACTCGCCCCC TTGTTTGGCT CTTGGTTGGC TGATGGCATG
ACATGGCGTG AGGGCATGCA GTTGGCCGCG CTGATTCCGT CAGCATTGTT CTTACTGGCG
CTGTTCTTAC TGCGTAATCG CCCGACAGAC ATTGGGCTAA AACCTTTTGG CTTTTCAGGT
GAAGCGAGTG CACCTGGGGC TGATTTATCC CAGCACGGGT TAACCTACAA AGAGGCTATC
AAAACGCGTT CGTTTTGGTC TATTGCCTTT ATAGCCATGT TTACCTTTTA TACGATCATG
GGGTTTCAGG CGAACTTGGT GCTCCACTTA ATGGATTTAG GCTTTACCTT GCAATCTGCC
GCAGCGGGCC TGAGCGTATT ATTTGTCCCC GCACTAATAG GTAAGTTTTT GTTTGGTTTA
GTGGCAGATA AAATTACTGG TAAGCGTGTG CTTTATACAA ACCTGCTACT GATGCTAACA
GGCTTAATAG GCATGCTATT CGCGGATAAA GATAACGTGC TGATTGCCAT TGGATTAATT
GGCTTTATGT GGGGTGGTTT CTACACCTTG CTGCAATTAA ACGCCGTGAA TAACTTCGGT
TTGAAAGCCT CAGGCAAATT GCTGGGAACT ATTACCGTGC TCGATGCATT CGGTGGTGGA
CTGGGCATTT ATGCCACAGG CGCAATATAC GATGCCTACG GTAGCTATCA AAATGCCTTT
ATGATCTTCT GCGTATTGGT TGCCTTGTCT GTGATCCTTA TCAGCCAAGT AAAAAAACAC
GTTTAG
|
|---|
| Protein sequence | MQSVTESSDS PISNEGKRMG HPMHWITVFI AMMCLLISNG MVITGITAFD SAMLTEFSNW
SRGDLKLRGL ITLALTGVLA PFVGILIDKI GVKFLVMVGA IVLSLCFYAY GNIRDISDLY
LIHAAFSIVL LACGLNVAVI LVSNWFVKLR GTAIGIAVVG TSLGGAVLAP LFGSWLADGM
TWREGMQLAA LIPSALFLLA LFLLRNRPTD IGLKPFGFSG EASAPGADLS QHGLTYKEAI
KTRSFWSIAF IAMFTFYTIM GFQANLVLHL MDLGFTLQSA AAGLSVLFVP ALIGKFLFGL
VADKITGKRV LYTNLLLMLT GLIGMLFADK DNVLIAIGLI GFMWGGFYTL LQLNAVNNFG
LKASGKLLGT ITVLDAFGGG LGIYATGAIY DAYGSYQNAF MIFCVLVALS VILISQVKKH
V
|
|---|
| |