| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1503 |
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| Symbol | |
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| ID | 4172952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1805833 |
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| End bp | 1808088 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054512 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_661079 |
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| Protein GI | 109897824 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.388134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACTG TGACAAAAGG ACAACACACA GATAGCCCTT TTAACAAACC ACGCTCCCGG
GGAATTCGAG CATCCCAGCA AAAATTGCGT ACAGCGCAGT TAGCGGCTGG GTTCAAGTCT
CAGGCGGAGG TGGTTGATAA AATACAGCAA ATAGAGGGCT TAAAGAAAGC ACCGCGCTCT
CTGGTAAGTC GCGTATTTCG TGGCGAATCA GTCGACCCCT TAAGTATTGA GCGGGTAGCA
AAAGCGCTCG ATGTGCAAGC ATGGGCGCTG TATTTAGATT CAGCTGAAGT CGATCATCAG
CCTAGTGGCG GCTTGCTGGA GAGTGATGAC ACATCTGGTA TTCAGACCGA TGAAGTTCCT
CCCTCGCTCA GTGCGCAACA CACTCATATG CAAACACCAA TAAACAGTGA AATGCAGTCA
GTCCCTCAGG CTGAACAAAA CCTTAGCAAA CCGTTTACTT TCAAAGCGCC CTCAGCGGAT
GACAGCCGCA GTGATGGGGA TAACAGCCCT TCTCAACCAC ATGCTTCTGA GCGAACGCAT
CAAGCGCCCC CGAAAGAACA AGAGCAAGAA CAAGAACAAC GAAAAAATAA ACGCCTGCCC
TTTTTGGTAA TCACCCTAAT AGTGCTGTTA GGCGTCTTAG TCATAGACCG ATTTTGGCCG
ATGGACGATT TAAATTCTGC AGGTAATACA CTAGCGGGTG TTGTTGATAT CGATAATAAA
GTAGTCGCTG TGATCCCGAT TAAAGGCCGC AGAGGAGCAG ATATAACCCG TAGCATTGAG
CAATTACTGG CAGGCCCTAC TCAACTAATT GTAGGTAGCT CAGCCCTCCA TGCTGGCGTG
CAAAGCCCTC AAGAATTATT ACGCAATAAA AAAGCAGATT TGGTGATTAG CGCAGAGCTG
ATTGAGATAG GCCGCTACAT CGCGGTTCGT TTATTTTTAT CTCGAGATGA AGATATGCAG
CAAGTGTGGT CTGGGGTTTT CAGCAAGTCT TCTTCACAAC AGTATATTGA ACTGCAGCTC
AAAAAAGGTT TGAACACCTT GCTCACGAAA CGTCCCATTG CAGACATCGC CGATTGGTAT
AGCCTGCAAC GGTTCTTAAA TGGCATGAAG TATTTTGAAG GTGAGCGCTC AGAGCAAGTT
ATTTTGCGGG CAATGGCTGA TTTTCAGCGG GTGATTAGCA GCGCCCCAAA TTTAGTCCAT
GGATACGCTG GCATGTGCGC GGCTTTAGTG GAACAAAACC TTGAAACCAG TGATAAAAAC
AACCTTGAAG AAGCATCCAG ATATTGCTCA ACTGGCTTCG AAATAGAGCC AGATTCTGTT
TTTATTCAAA ATGCATTGGG TAACCTTGCC CGTGTTAAGG GCGATTACCT AATTGCTAAC
GCACACTTTG AACAAGCCTT ACATACGGAC CCCAATGATA TTACCGCTTT GCAAAAGATG
GCTGAAAGCC AAATGCGCAT CTTCTTAAAA AGCCGCGAGC CTGAACTTTT CTCGCGCATT
TCATCTCAGC TAGCGCATGC AGCTGAGCTT GAGCCAGACA ACTGGAAAAT CCCTTATACC
CAAGGCCGTG CTCATTATTT TAAAGGCGAT CAATTGGGCG CTATCGAATA TTTTTCCCGT
GCAGCTGAAC TGTCAGTTAA TTATCAAACC TTAAACAACT TAGCGGCGTT ACAGTTTTGC
GTGGGTGATT TACAAAACGC CAAAACGCAT TATCAACGAG CGTTAACTCT CAAACCGCAG
CATGCTGTGT TGTTATCGAA TATTGCAGTA CTGCACTTTT ACCTAGGTGA AAGCCAACAG
GCGTTGGATA TTTTTGAGCC GCAAATTAAG CGCATCACCG AAGAGGGAGG CCCAGGGTTA
TATCAACTCT GGTCTAATGT CGCCGATGTT TATCGCACCC AAGGTAACTC GGAAAAAGCA
CTCCAGGCGT ATCACAATGC TATGTCCGAA CTTGACCGTG AAGTAAGTAA AGGGGAAGCC
AATGTGATGC AAAAAGCGTC TCGTTTGGCT ATGTATATTT TGGTCACTGA ACTGTCACCC
GAGTTGCAAA CCACAGAGCT CTTAGCCTCT TTAAAAAAAC AAGCTGAGGC ACTCAATGCC
GCGGCGGACC CAGTATCGTT ACATCAACTT GCTTTAAGTT GGTTGCACTT AGGTAATGAA
GAAAAAGCCC GCTACTACCG CGATAAACTA AAGGCCATTT GCCCTGGGTT CGCCGCTTCA
CCTGACTTTC AGGCACTTGA GCCACACACC ATGTAA
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| Protein sequence | MTTVTKGQHT DSPFNKPRSR GIRASQQKLR TAQLAAGFKS QAEVVDKIQQ IEGLKKAPRS
LVSRVFRGES VDPLSIERVA KALDVQAWAL YLDSAEVDHQ PSGGLLESDD TSGIQTDEVP
PSLSAQHTHM QTPINSEMQS VPQAEQNLSK PFTFKAPSAD DSRSDGDNSP SQPHASERTH
QAPPKEQEQE QEQRKNKRLP FLVITLIVLL GVLVIDRFWP MDDLNSAGNT LAGVVDIDNK
VVAVIPIKGR RGADITRSIE QLLAGPTQLI VGSSALHAGV QSPQELLRNK KADLVISAEL
IEIGRYIAVR LFLSRDEDMQ QVWSGVFSKS SSQQYIELQL KKGLNTLLTK RPIADIADWY
SLQRFLNGMK YFEGERSEQV ILRAMADFQR VISSAPNLVH GYAGMCAALV EQNLETSDKN
NLEEASRYCS TGFEIEPDSV FIQNALGNLA RVKGDYLIAN AHFEQALHTD PNDITALQKM
AESQMRIFLK SREPELFSRI SSQLAHAAEL EPDNWKIPYT QGRAHYFKGD QLGAIEYFSR
AAELSVNYQT LNNLAALQFC VGDLQNAKTH YQRALTLKPQ HAVLLSNIAV LHFYLGESQQ
ALDIFEPQIK RITEEGGPGL YQLWSNVADV YRTQGNSEKA LQAYHNAMSE LDREVSKGEA
NVMQKASRLA MYILVTELSP ELQTTELLAS LKKQAEALNA AADPVSLHQL ALSWLHLGNE
EKARYYRDKL KAICPGFAAS PDFQALEPHT M
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