| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1368 |
|---|
| Symbol | |
|---|
| ID | 4171865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1649245 |
|---|
| End bp | 1650792 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054381 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_660948 |
|---|
| Protein GI | 109897693 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.663143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGCC ATTTTCATTT AGCGGGTGAA CAAGTAAAGC GTGAAGACAT GTTATCCCGA
GCGAGAAAAA TTGCTCAAAT ACTGCAAAAC AAAGGGGTGT CAACAGGTGA CGTAATTGCC
ATTTTACTGC GTAACGATAC TACGCTTTAC GAGGTCGTAG AGGCATGTCG CTATGTTGGG
GCGTATTATG TCACTTTGAA TTGGCATGGC ACCCAAGCGG AATTAATGCC CATCCTTAGT
GATAGTGGCG CGAAAGTATT AGTCGGCCAC AGCAATCTAC TGGATCAATT TACGCAACCG
CTACCCCCTG ATTTAGCCGT TTTAGTGGTT GATACGCCAG ACGTTATCAA TCACCGCTAC
GCACCGTCCG ATGTAGTTCC CACAGCAAAA AATTCGACCG ACGATAGGCT CAGCGCTGCT
AACCATGGGG AACGATTGGC CGCAGTGCTT AGTGATACCC CTGAAATAGA AAGTCAGCCT
GAGCGCTTTA GAGGCATGTT TTCATATACG TCTGGCAGTA CAGGGAAGCC AAAAGGCATT
AAACGCGAAT ACGATGAACA AAGACCCGAT CCTTACACTG TCTTTGCTGG CCTAGCAAAG
GCGCTTATGC AATTAGACAG CGGTGATCGC TTCTATATAG CAGCGCCGCT TTACCACAGT
GCTCCACATG CATTAACACT ATGCTGCCTG GCGGCAGGAA ACGTAACTGT ATTTATCGAG
CCTAAATTTG ATCCAGAGCG CTTTCTAGCC GATGTGCAGC AGCATAAAAT AACCCATACC
TACATAGTGC CTACTATGAT GATCCGCTTG TTAAAGCTGC CACAAGAGGT ACGTGAAAAA
TACGATATGT CGAGTTTACG CTACGCATTA TCCACGGGCT CGGCTTGGCC TGTTGATGTT
AAACAAGGCA TGATTGACTG GTTCGGGCCG ATATTTTTTG AGTCCTATGG TGCCAGTGAA
TTAGGTTTTA TGACGTTAAT TTCATCTCAA GAGTCGCTGG CGAAACCCGG CTCAGTAGGC
AAAGCCATAG CAGGCGGTTC GATAATTATA CTGGATGATG CTATGCAGCC AGTGCCCACG
GGAGAATCAG GTTCTATTTA CGTACATCTA CCCATGTTTG GACCGTTTAA ATACACCAAT
ACGCAGGGGA CGCTCGATGG CCTGCATTAC CAAAATTACA CCACACTCGG TGATATGGGC
TATTTAGATG CCGACGGATA CTTGTTCATC AACGATCGTA AGAAAGACAT GATCATCTCA
GGCGGCGCAA ATATATTCCC CGCCGAAATA GAGGCCGTTC TCATTCATAT GCCGCAAATA
GCCGATTGCG CAATCTTCGG TATTCCTGAC AGTGAATTTG GCGAGATGAT AGTGCTGGCG
GCTCAATGTC AGCCAGACCA ACATTTAGAC ATAGCGCAAG TGTGTGAGTT TTTGGACGGG
CGTATCGCGC GTTTCAAATG GCCTAAAAAA CTAGAGCTAC ATGATCAGTT GCCAAGAGAA
GACAGCGGCA AAATATTTAA ACAACGCTTA CGAGCAGCGT ATGTTTAA
|
|---|
| Protein sequence | MSGHFHLAGE QVKREDMLSR ARKIAQILQN KGVSTGDVIA ILLRNDTTLY EVVEACRYVG
AYYVTLNWHG TQAELMPILS DSGAKVLVGH SNLLDQFTQP LPPDLAVLVV DTPDVINHRY
APSDVVPTAK NSTDDRLSAA NHGERLAAVL SDTPEIESQP ERFRGMFSYT SGSTGKPKGI
KREYDEQRPD PYTVFAGLAK ALMQLDSGDR FYIAAPLYHS APHALTLCCL AAGNVTVFIE
PKFDPERFLA DVQQHKITHT YIVPTMMIRL LKLPQEVREK YDMSSLRYAL STGSAWPVDV
KQGMIDWFGP IFFESYGASE LGFMTLISSQ ESLAKPGSVG KAIAGGSIII LDDAMQPVPT
GESGSIYVHL PMFGPFKYTN TQGTLDGLHY QNYTTLGDMG YLDADGYLFI NDRKKDMIIS
GGANIFPAEI EAVLIHMPQI ADCAIFGIPD SEFGEMIVLA AQCQPDQHLD IAQVCEFLDG
RIARFKWPKK LELHDQLPRE DSGKIFKQRL RAAYV
|
|---|
| |