| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1333 |
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| Symbol | |
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| ID | 4172797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1597436 |
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| End bp | 1598107 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054340 |
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| Product | anti-ECFsigma factor, ChrR |
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| Protein accession | YP_660913 |
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| Protein GI | 109897658 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3806] Anti-sigma factor |
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| TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0130181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTAATT TTCACCCAGA TTTGGCGCAT CTTCGCGCTT TCGCTGAAGG AACCTGCCCA
ACAAATTTAG CTTTGATGAT ATCCGCCCAC GTAGATATGT GCCCTCGCTG CCAAGCAATA
ACCATGCAGG CACAAGAAGA GGTGGGACTT GAGGTTTTTC CAACCAACCT AGAAGCGGTT
GAACCACAAC CTGATTTTAA CGATATGATG TTGCAAATAA TGCAAACTCC CAACGTTGAA
GCTCCGGTTC TTCAGCCCGT TAATAACATG CTTGAGTTGG ATGGAAAGCA CTTTGCCCTG
CCAAGAGCGC TTGCTCGATA CACCCACAAA ACGGGTAATT GGTCACGGCT TGTAGGTAAG
CTATGGCAGG CGCCGGTTGA TTTAGGTCAG GTCGGACAAG CTAACTTCAT CTACATGGAA
AAGGGCGGCA AAGTACCAGA GCATACTCAC AAGGGAACCG AATTTACGTT AGTGATTGAT
GGTCAATTTA GTGATGGATT AGCTGATTAC GATTGCGGAG ACTTCACTAT CATGGATAGC
ACCAAGAAGC ATATGCCGTT TTCAGAAGCT GACGAGGGAT GTTTGGTGTT TACTATGGTG
GACAAGCCGT TACATTTTAC GTCAGGCTTA GCCCGTCTTT TGAATCCGTT CAGTCAATTA
TTTTTCAAAT AA
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| Protein sequence | MINFHPDLAH LRAFAEGTCP TNLALMISAH VDMCPRCQAI TMQAQEEVGL EVFPTNLEAV
EPQPDFNDMM LQIMQTPNVE APVLQPVNNM LELDGKHFAL PRALARYTHK TGNWSRLVGK
LWQAPVDLGQ VGQANFIYME KGGKVPEHTH KGTEFTLVID GQFSDGLADY DCGDFTIMDS
TKKHMPFSEA DEGCLVFTMV DKPLHFTSGL ARLLNPFSQL FFK
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