| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1269 |
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| Symbol | |
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| ID | 4173280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1522222 |
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| End bp | 1523085 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054276 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_660849 |
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| Protein GI | 109897594 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAACAAC TCAATCAACT TTATGAACAG CATGTAGGTG AAAATGTGTT TAATCCGAGC
CATTACGCGC CGGTTTTAAA TCAACATGAG CTCAGTGCGT TCTTTCAAAA GTGGTTAACC
ACAATTGACT TAGCTGTTCT TAGCGAGTTG TTTTTCGAAC AACTGCAAAA TACGTTACCT
CTGTGCGGAT TAAAAATCCA GTGGAATCAC AGTGATATCA CCCACGGTAC ACTCACCAAT
AAACCGTATA ATAAGCGCTT AGCCGTGCGT CAGGGGGATA AAGAAATCGC CATGATCCAC
TATTCACTGT CTCGCACTTT GGCCGTGCGT GAGTGGCAAA TACTACAACA ACTGCACATG
CTGTTTAAGA ACCCGCTAAA GAACGGTTTA GAGTACGAGC GCATCAAACT AGTTGCCACC
AGAGATAACT TGACGGCACT GGGAAATCGC AGCAATTTTG ATGACACCAT GCACCGTTTA
TTCAGTCAGG CGAAACGCCA ACCTTGTCAG TTCGCTTTGC TGGTTATTGA TCTTGATAAA
TTTAAACAAG TGAATGATCA ATTTGGTCAT ACACAAGGAG ACAAAATACT CATCACCTGT
GCCCAAACAA TCTCAGCTTG CTTGCGAGAA ACCGACTTTG CCTTTCGTTT CGGTGGCGAC
GAGTTTTGTT GCCTGTTAAC CGACACATGC ATAGATTCCT GCCAGCAAAT AACTCAACGT
ATTCAGCTGG CCTTTAAAGA AGATAGCCTG CTTGCTCAGC ACTACATTAG TTGCAGTATT
GGTAGTGCCA TTTATCAAGA CGATGACACA CAGCATAGCC TTTTCATGCG CGCAGATGCC
GCCATGTACC GCAATAAAAA GTAA
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| Protein sequence | MEQLNQLYEQ HVGENVFNPS HYAPVLNQHE LSAFFQKWLT TIDLAVLSEL FFEQLQNTLP
LCGLKIQWNH SDITHGTLTN KPYNKRLAVR QGDKEIAMIH YSLSRTLAVR EWQILQQLHM
LFKNPLKNGL EYERIKLVAT RDNLTALGNR SNFDDTMHRL FSQAKRQPCQ FALLVIDLDK
FKQVNDQFGH TQGDKILITC AQTISACLRE TDFAFRFGGD EFCCLLTDTC IDSCQQITQR
IQLAFKEDSL LAQHYISCSI GSAIYQDDDT QHSLFMRADA AMYRNKK
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