| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1262 |
|---|
| Symbol | |
|---|
| ID | 4173273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1511487 |
|---|
| End bp | 1512653 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638054269 |
|---|
| Product | lipid-A-disaccharide synthase |
|---|
| Protein accession | YP_660842 |
|---|
| Protein GI | 109897587 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0763] Lipid A disaccharide synthetase |
|---|
| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA AAGCCATTAG AGTAGGAATA GTTGCCGGTG AAACATCCGG CGACATACTA
GCCGCCGGAT TAATCAGCAG TATTAAGCAG CAATATCCCA ATGCCATTTT TGAAGGGATA
GCCGGTCCAC GCATGCAAGC GCAAGGGTGT ACAACGATAT TCGACATGGA AGAACTATCT
GTGATGGGAC TCGTTGAAGT GTTATCGCGT ATTCGCAGAT TGTTGTTTGT TCGCAAAAGT
TTATATCAAC ATTTTATCGC CAATCCCCCA GATATTTTTA TCGGTGTTGA TGCCCCAGAT
TTTAACTTAC GCTTAGAGTT ACCTCTTAAA AAAGCGGGTA TTAAAACCGT GCATTACGTC
AGCCCCACAG TTTGGGCTTG GCGCGAGAAG CGCGTGTTCA ATATTGCCAA AGCAACCGAT
CTGGTTTTGA GTTTGTTTCC GTTTGAGAAG CAGGTCTACG ATAAGCATAA TATCCCATGC
CAATTTGTAG GCCATACCAT GGCAGATGGC ATCCCTTTGG TGCCTGATAA AGGTGCTGCA
CGTAAAGCAT TAAAAGTACA CCCAGACGAG CGAGTATTGG CCTTGTTGCC TGGTAGTCGC
CACAGTGAAG TGAGCTTGCT GCTCGATATT TTTATGCAAA GCGCAGAACT ATTGTCCAAA
GACGTAAGCG ATTTATGTGT GCTCATCCCA GTGGTTAACA AAGAGCGCAA ACGTCAAGTT
GAAGACTATA TGCGAGAGCA CTTGGTTGAC GTAAATTACC GAGTGGTTAT CGGCCATGCT
CGTGAAGTGA TGACAGCTTC TGACGCTGTA TTGCTAGCGT CGGGGACAGC GACGCTAGAA
GCCATGCTAT GCAAACGCCC TATGGTGGTA GCATATCGTA TGAGCTGGCT AACCCACCAA
ATGATGAAGC GTTTATATAT TGCTAAATAT TTTGCATTAC CCAATATTTT AGCGGATGAA
GAGTTAGTCC CCGAATTATT GCAAGAAGAC GTTAACCCTC AGAATATTGC CGGCAAATTA
TTGCACTACT TTAACCAGAG TGAAGATCAG AAAGCTGCGT TAGTCGCCCG CTTTACTGAA
CTTCATGGGT TACTCAAGCA AGATGCAGAT GCCCAAGCGG CCAAAGCGGT GTTATCGCTA
ATAGAACCCA ATCAAGAGAG CAAGTAA
|
|---|
| Protein sequence | MSEKAIRVGI VAGETSGDIL AAGLISSIKQ QYPNAIFEGI AGPRMQAQGC TTIFDMEELS
VMGLVEVLSR IRRLLFVRKS LYQHFIANPP DIFIGVDAPD FNLRLELPLK KAGIKTVHYV
SPTVWAWREK RVFNIAKATD LVLSLFPFEK QVYDKHNIPC QFVGHTMADG IPLVPDKGAA
RKALKVHPDE RVLALLPGSR HSEVSLLLDI FMQSAELLSK DVSDLCVLIP VVNKERKRQV
EDYMREHLVD VNYRVVIGHA REVMTASDAV LLASGTATLE AMLCKRPMVV AYRMSWLTHQ
MMKRLYIAKY FALPNILADE ELVPELLQED VNPQNIAGKL LHYFNQSEDQ KAALVARFTE
LHGLLKQDAD AQAAKAVLSL IEPNQESK
|
|---|
| |