| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1247 |
|---|
| Symbol | |
|---|
| ID | 4173258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 1494644 |
|---|
| End bp | 1497256 |
|---|
| Gene Length | 2613 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638054254 |
|---|
| Product | UTP-GlnB uridylyltransferase, GlnD |
|---|
| Protein accession | YP_660827 |
|---|
| Protein GI | 109897572 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2844] UTP:GlnB (protein PII) uridylyltransferase |
|---|
| TIGRFAM ID | [TIGR01693] [Protein-PII] uridylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCTTTGC AAACGTTAAT AAATCAAATC CAACTTATTC AATCCACTGA CGACATTCCT
GCATTTAAAG CCTGCATCAG CGATAGTTAT GACTGGTTAG AGAGTGAGTT TACTCGAGTA
GATGTAGACA GCCTTGTTCT TGGTCGTGCC ACCTTTGTCG ATGCTCTTTT ATGCCATGCA
TGGGAACTAC TCGATTTACA TAAAGAAACT AAAATAGCAT TGGTGGCGGT AGGCGGTTAC
GGTAGAGGCC AACTGCAACC CTATTCAGAT ATTGACCTGT TGCTACTTAG CCCTAGTTCG
CTCTCTCAAG CCCAGCAAAA TACCATAGGT CAGTTTATCA CCTTTTTGTG GGATGTTGGT
TTAGACATAG GCCAATCAGT TCGTACCATA AAGGAAACCG TTTCCCTAGC CCGTGGTGAT
GTCACCATAG CGACAAATTT GGTCGAAGCT CGGCTTCTGA CAGGTAATCA AGACACCTTT
TTAACTCTGA ATAAAAAACT TCATGGGCGC GGTTATTGGA CTAGCAAAGA CTTTTTTATC
GCTAAATCAA AAGAACAACA AATACGCCAT TCTAAATTTA AAGGCACCTC TTATAACCTT
GAACCCAATG TTAAAGAGAG CCCTGGCTGC TTGCGTGACA TACAAAATAT TGGTTGGATA
GCTAAGAAAC ACTTTAAGGT GATGAAGGGC ACGGAACTGG TAGAACGCGG TTACTTCACA
GAGCAAGAAT TTCAGGAGCT ACTAGAGTGT CGCTCTAATC TATGGCGCAT AAGATTTGCA
CTGCATATGC AAGCTGGGCG CAGCGAAAAT CGTTTGTTAT TTGATTATCA AAATGATGTG
GCCAGTCGCT TAGGTTATGG TGATGATGGT AAGGCATCTG TCGAGCGCAT GATGAAATCG
TTTTTCAGAA CGGTAAGGCG TATTAGTGAG CTTAACGAAA TGTTATTGCA ACGCTTTGGA
CACGATGTAT TGCATATCAA AGTCAAAGAT CGCTCAATTA TCAATCCAAG CTTTGAAATT
GCCGATGGTC TACTCGCCAC GCGGCATGAC AACGTATTCA ATGAGCCAGA AGACATTCTG
CAATGCTTAC TACTGATTGC AGATACGCCG CAAATTGAAG GTTTGCATTC AAGCGTACTT
AGTCAACTAC GCTTAGCGCG TCGTAAGTTC CATAGTCAAT ATTACTGTGA AATTCCTCGC
TGTCGCACGC TATTCATTGA ACTGATGCAA CACCCAGATT TCTTTGGTTT AGGGTGGGAC
ATCATGCATA AGCACGGTAT TTTGCAGTCC TATTTACCGC AATGGGATCA TATTGTAGGC
ATGATGCAAT TCGACTTATT TCATGCATAC ACTGTTGATG AGCACACCCA TCGATTAGTT
AAGAACGTTT ATCAATACAG TCAGGGCAAC GCAGGCTTTC CTCGTTGTAG CCGTATCGTG
CGTAACCTAG ACAAACCTGA GTTGTTATAC ATTGCCTCTA TCTTTCATGA TATTGGTAAA
GGCCGTAACG GTGACCACTC TAAATTAGGT GCTAAAGATG TCGCCGAGTT TTGCACCATG
CATGACATTA ATGACAAAGA CGCCGAACTC ATCGCTTGGT TAGTTGAAAG CCACCTAATG
ATGTCCGTTA TTGCACAGCG CCGCGATATA TACGACCCAG AGGTGATCAA CGAATTTGCG
GGTAATGTAC GCACGCACAA TCACCTTAAT CACCTTTATG TGCTGACACT GGCTGATATT
CGTGCCACCA ATGACAACTT ATGGAATGAC TGGAAAGCCA CTCTACTTCG TGAACTGTAT
TTGCTCACAC AAAAAGCCTT AGATAACGGC TTGGAATGCA AGGTTGCTTT GCAAGATAGG
ATTGACGAAC ATCAGACCAA AGCAAAAAGA CTACTGGTAA ACCGCGGCGT AAATGAAAGC
CAAGTTGAAC AGTTTTGGAA ACGCTTAACG GACGATTACT TTGTGCGTTT CAAGCCCGAT
CAAATTGCGT GGCATGCAGG CGTTATTCTA GCAGCTCATC CTATGACTGA TGACTTTTTA
CTCGTTGAAG CCAATGAACA CACCGCTAAA TCGGGTACAG AATTACTGGT GTATGGTAAG
GATAAAATCA ACTTGTTCGC TCAGGTTGCT TCTGTACTTG ATAGCCGCAA CTGTTCGATT
CATGATGCGC AGATCATGAA AACCAATGAT GGCTACGTCT TTGATAGCTT CATTGTGTTG
GAACAATCGG GAGACAGGAT TGACTCGGCG AGTCGCTTAA GCAGTTTAAA AGAAGCTGTG
ACCAATCAGC TAAACAAACC GGGTGAAGAG CACCAGAACC GTCGTAAAAT GTCCCGTCAA
ATGAAACAGC TGGACGTCCC CACTAAAGTG CGGTTCTATT CCAGTCAGCC TGATGTCACG
CTGGTTGAAC TTGAAGCATT AGATGCGCCA GGGCTGTTGG CTAAAGTGGG CAACTTATTG
GTGGAAATGG AGTTTTCATT ACGTATGGCT AAAATCGCCA CGATCGGCGA GCGGGCTGAA
GATTTATTCA TCATTAGCAA TAGTGACGAC AAAGCCTTAA CACAAAATCA GGAAATCGAG
CTCAAAAAGC GCTTATCCGA CACCCTAGAT TAA
|
|---|
| Protein sequence | MSLQTLINQI QLIQSTDDIP AFKACISDSY DWLESEFTRV DVDSLVLGRA TFVDALLCHA
WELLDLHKET KIALVAVGGY GRGQLQPYSD IDLLLLSPSS LSQAQQNTIG QFITFLWDVG
LDIGQSVRTI KETVSLARGD VTIATNLVEA RLLTGNQDTF LTLNKKLHGR GYWTSKDFFI
AKSKEQQIRH SKFKGTSYNL EPNVKESPGC LRDIQNIGWI AKKHFKVMKG TELVERGYFT
EQEFQELLEC RSNLWRIRFA LHMQAGRSEN RLLFDYQNDV ASRLGYGDDG KASVERMMKS
FFRTVRRISE LNEMLLQRFG HDVLHIKVKD RSIINPSFEI ADGLLATRHD NVFNEPEDIL
QCLLLIADTP QIEGLHSSVL SQLRLARRKF HSQYYCEIPR CRTLFIELMQ HPDFFGLGWD
IMHKHGILQS YLPQWDHIVG MMQFDLFHAY TVDEHTHRLV KNVYQYSQGN AGFPRCSRIV
RNLDKPELLY IASIFHDIGK GRNGDHSKLG AKDVAEFCTM HDINDKDAEL IAWLVESHLM
MSVIAQRRDI YDPEVINEFA GNVRTHNHLN HLYVLTLADI RATNDNLWND WKATLLRELY
LLTQKALDNG LECKVALQDR IDEHQTKAKR LLVNRGVNES QVEQFWKRLT DDYFVRFKPD
QIAWHAGVIL AAHPMTDDFL LVEANEHTAK SGTELLVYGK DKINLFAQVA SVLDSRNCSI
HDAQIMKTND GYVFDSFIVL EQSGDRIDSA SRLSSLKEAV TNQLNKPGEE HQNRRKMSRQ
MKQLDVPTKV RFYSSQPDVT LVELEALDAP GLLAKVGNLL VEMEFSLRMA KIATIGERAE
DLFIISNSDD KALTQNQEIE LKKRLSDTLD
|
|---|
| |