Gene Patl_1230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1230 
SymbolsecD 
ID4172696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1479262 
End bp1481106 
Gene Length1845 bp 
Protein Length614 aa 
Translation table11 
GC content46% 
IMG OID638054237 
Productpreprotein translocase subunit SecD 
Protein accessionYP_660810 
Protein GI109897555 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.181896 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAACC AAACTCCGTT ATGGAAGTAT CTCGTACTGA TTTTTATCGT CGGTATGTGT 
GCTCTATACG CTACTCCCAA TTTGTACGGT GAAGACTATG CCGTTCAAAT CTCTGCGGGC
CGAAATGCCA GTGTCGATGA GTCACTGTTA AGCAAAGTCA CAGAAACGTT ATCTAGCGAG
AATATAGAAA CAAAAAATAT CGCTTTAGAT AATGAACAAA TCTTGGTTCG CTTGACCAAT
TCTGATAGTC AACTTATCGC GCGAGAAACC CTGCAACGAG CATTAGGTGA TGACTACTAC
GTGGCCATGA ACCTAGCCCC AGACACGCCA GCATGGCTTG AAGCCATTGG CGGTGCACCG
ATGAAGCTTG GGCTCGATTT GCGCGGTGGT GTGCACTTCC TAATGGAAGT GGACATGAAC
TCAGCAGTCA ATAAGTCTTT TGAAGATATG GTATCCGATT TTAGAAGTGC ACTTCGTGAA
GAAGGTATTC GCTATCGCAC AGTGCGCCAA GTTGAAGGTG GAGTGGAAAT ATTCTTCCGT
GACCAAGATA CCCTAGATAA GGCAGAGTTC TTTTTACGTA ACCGTAATCG TGACTTGGTT
TTCACTGAGA AAAATGACCT AAAAATCGTG GTCAGTATGT CAGAGCAGAA GCTTGCTGAA
ACCCGTGATT ACGCGGTTAA GCAGAACATC ACCATTATCC GTAACCGGGT AAACCAACTG
GGTGTAGCTG AGCCAAGTGT ACAAAAGCAA GGCGTTGACC GCATCGCTGT GCAATTACCT
GGCATACAAG ATACTGCCCG TGCTAAAGAA ATTCTAAATG CAACGGCGAC CTTGGAATTC
CGCTCTGTAG ATTTAGACCA TGATGTACGT GATGCTGTTG CTGGGCGTGT ACCTGCAGGC
TCTGAACTGG TACTCGATCA GCAAGGTCAG CCGCAACTGC TGAAAAAGAA AATCATTCTG
ACCGGTAACC ACATCATTGA TGCTAACTCT AGCGCAGATG AGTACGGTAT TCCTCAGGTG
AATATTTCAC TTGATTCTAA AGGTGGCAGT AAGATGTCAC AGTTTACCAA AGACAGTATT
GGTAAGCCGA TGGCGACCGT CTTTATTGAA TATAAATCAA CGGGTGAGCG AGATGCTAAC
GACAAGCTGA TTTTTGAAGC GAAGCGTGAA GTGATCAGTA TCGCTACCAT TCAAGCGCGC
TTGGGCAGTA GTTTCCGTAT TACCGGGTTA GACTCGCCAC AAGAAGCGCA TAACCTGTCG
CTACTACTCA GAGCTGGTGC ACTGATAGCA CCGATTCAAA TCGTCGAAGA GCGCACCGTT
GGGCCAAGCT TAGGTAAAGA GAACATCGCA CTGGGTACAC AAGCCATCAT TTGGGGCTTT
GTCGCAGTAC TAATCTTTAT GCTGATTTAC TACAAAGCAT TTGGTTTGGT CGCGAACCTT
GCTCTGACTC TAAACCTAGT GATGATCGTT GGCATTATGT CGATGATACC GGGCGCGACA
TTATCGCTAC CTGGTATGGC CGGGATCGTG TTAACGGTCG GTATGGCGGT TGATGCAAAC
GTTCTGATAT TCGAGCGTAT CCGAGAAGAA CTACGGGAAG GGCGCAGCCC CCAACAGGCA
ATTCATCACG GTTATGACAG TGCATTCTCG ACCATTCTTG ATGCCAACAT TACAACTTTC
ATTGCGGGTC TGATTCTGTT TGCTGTGGGC ACAGGCCCAA TTAAAGGCTT CTCGATCACG
TTAATGATTG GTATTGCCAC TTCCATGTTT ACCGCTATTT TTGTTACCCG TGCTGTTGTA
AATGCATGGT GTGGTGGTAA GCCTTTGAAA AAATTATCAA TATAG
 
Protein sequence
MLNQTPLWKY LVLIFIVGMC ALYATPNLYG EDYAVQISAG RNASVDESLL SKVTETLSSE 
NIETKNIALD NEQILVRLTN SDSQLIARET LQRALGDDYY VAMNLAPDTP AWLEAIGGAP
MKLGLDLRGG VHFLMEVDMN SAVNKSFEDM VSDFRSALRE EGIRYRTVRQ VEGGVEIFFR
DQDTLDKAEF FLRNRNRDLV FTEKNDLKIV VSMSEQKLAE TRDYAVKQNI TIIRNRVNQL
GVAEPSVQKQ GVDRIAVQLP GIQDTARAKE ILNATATLEF RSVDLDHDVR DAVAGRVPAG
SELVLDQQGQ PQLLKKKIIL TGNHIIDANS SADEYGIPQV NISLDSKGGS KMSQFTKDSI
GKPMATVFIE YKSTGERDAN DKLIFEAKRE VISIATIQAR LGSSFRITGL DSPQEAHNLS
LLLRAGALIA PIQIVEERTV GPSLGKENIA LGTQAIIWGF VAVLIFMLIY YKAFGLVANL
ALTLNLVMIV GIMSMIPGAT LSLPGMAGIV LTVGMAVDAN VLIFERIREE LREGRSPQQA
IHHGYDSAFS TILDANITTF IAGLILFAVG TGPIKGFSIT LMIGIATSMF TAIFVTRAVV
NAWCGGKPLK KLSI