Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1230 |
Symbol | secD |
ID | 4172696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1479262 |
End bp | 1481106 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054237 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_660810 |
Protein GI | 109897555 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.181896 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAAACC AAACTCCGTT ATGGAAGTAT CTCGTACTGA TTTTTATCGT CGGTATGTGT GCTCTATACG CTACTCCCAA TTTGTACGGT GAAGACTATG CCGTTCAAAT CTCTGCGGGC CGAAATGCCA GTGTCGATGA GTCACTGTTA AGCAAAGTCA CAGAAACGTT ATCTAGCGAG AATATAGAAA CAAAAAATAT CGCTTTAGAT AATGAACAAA TCTTGGTTCG CTTGACCAAT TCTGATAGTC AACTTATCGC GCGAGAAACC CTGCAACGAG CATTAGGTGA TGACTACTAC GTGGCCATGA ACCTAGCCCC AGACACGCCA GCATGGCTTG AAGCCATTGG CGGTGCACCG ATGAAGCTTG GGCTCGATTT GCGCGGTGGT GTGCACTTCC TAATGGAAGT GGACATGAAC TCAGCAGTCA ATAAGTCTTT TGAAGATATG GTATCCGATT TTAGAAGTGC ACTTCGTGAA GAAGGTATTC GCTATCGCAC AGTGCGCCAA GTTGAAGGTG GAGTGGAAAT ATTCTTCCGT GACCAAGATA CCCTAGATAA GGCAGAGTTC TTTTTACGTA ACCGTAATCG TGACTTGGTT TTCACTGAGA AAAATGACCT AAAAATCGTG GTCAGTATGT CAGAGCAGAA GCTTGCTGAA ACCCGTGATT ACGCGGTTAA GCAGAACATC ACCATTATCC GTAACCGGGT AAACCAACTG GGTGTAGCTG AGCCAAGTGT ACAAAAGCAA GGCGTTGACC GCATCGCTGT GCAATTACCT GGCATACAAG ATACTGCCCG TGCTAAAGAA ATTCTAAATG CAACGGCGAC CTTGGAATTC CGCTCTGTAG ATTTAGACCA TGATGTACGT GATGCTGTTG CTGGGCGTGT ACCTGCAGGC TCTGAACTGG TACTCGATCA GCAAGGTCAG CCGCAACTGC TGAAAAAGAA AATCATTCTG ACCGGTAACC ACATCATTGA TGCTAACTCT AGCGCAGATG AGTACGGTAT TCCTCAGGTG AATATTTCAC TTGATTCTAA AGGTGGCAGT AAGATGTCAC AGTTTACCAA AGACAGTATT GGTAAGCCGA TGGCGACCGT CTTTATTGAA TATAAATCAA CGGGTGAGCG AGATGCTAAC GACAAGCTGA TTTTTGAAGC GAAGCGTGAA GTGATCAGTA TCGCTACCAT TCAAGCGCGC TTGGGCAGTA GTTTCCGTAT TACCGGGTTA GACTCGCCAC AAGAAGCGCA TAACCTGTCG CTACTACTCA GAGCTGGTGC ACTGATAGCA CCGATTCAAA TCGTCGAAGA GCGCACCGTT GGGCCAAGCT TAGGTAAAGA GAACATCGCA CTGGGTACAC AAGCCATCAT TTGGGGCTTT GTCGCAGTAC TAATCTTTAT GCTGATTTAC TACAAAGCAT TTGGTTTGGT CGCGAACCTT GCTCTGACTC TAAACCTAGT GATGATCGTT GGCATTATGT CGATGATACC GGGCGCGACA TTATCGCTAC CTGGTATGGC CGGGATCGTG TTAACGGTCG GTATGGCGGT TGATGCAAAC GTTCTGATAT TCGAGCGTAT CCGAGAAGAA CTACGGGAAG GGCGCAGCCC CCAACAGGCA ATTCATCACG GTTATGACAG TGCATTCTCG ACCATTCTTG ATGCCAACAT TACAACTTTC ATTGCGGGTC TGATTCTGTT TGCTGTGGGC ACAGGCCCAA TTAAAGGCTT CTCGATCACG TTAATGATTG GTATTGCCAC TTCCATGTTT ACCGCTATTT TTGTTACCCG TGCTGTTGTA AATGCATGGT GTGGTGGTAA GCCTTTGAAA AAATTATCAA TATAG
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Protein sequence | MLNQTPLWKY LVLIFIVGMC ALYATPNLYG EDYAVQISAG RNASVDESLL SKVTETLSSE NIETKNIALD NEQILVRLTN SDSQLIARET LQRALGDDYY VAMNLAPDTP AWLEAIGGAP MKLGLDLRGG VHFLMEVDMN SAVNKSFEDM VSDFRSALRE EGIRYRTVRQ VEGGVEIFFR DQDTLDKAEF FLRNRNRDLV FTEKNDLKIV VSMSEQKLAE TRDYAVKQNI TIIRNRVNQL GVAEPSVQKQ GVDRIAVQLP GIQDTARAKE ILNATATLEF RSVDLDHDVR DAVAGRVPAG SELVLDQQGQ PQLLKKKIIL TGNHIIDANS SADEYGIPQV NISLDSKGGS KMSQFTKDSI GKPMATVFIE YKSTGERDAN DKLIFEAKRE VISIATIQAR LGSSFRITGL DSPQEAHNLS LLLRAGALIA PIQIVEERTV GPSLGKENIA LGTQAIIWGF VAVLIFMLIY YKAFGLVANL ALTLNLVMIV GIMSMIPGAT LSLPGMAGIV LTVGMAVDAN VLIFERIREE LREGRSPQQA IHHGYDSAFS TILDANITTF IAGLILFAVG TGPIKGFSIT LMIGIATSMF TAIFVTRAVV NAWCGGKPLK KLSI
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