| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1183 |
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| Symbol | |
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| ID | 4172589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1424979 |
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| End bp | 1426571 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638054190 |
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| Product | choline dehydrogenase-like flavoprotein |
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| Protein accession | YP_660763 |
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| Protein GI | 109897508 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTATCG ACGCAAACAC TTTGTCCGAA TCCACAAAGC ACGTATACCA TTATTGCATT
CTCGGAGGTG GCGTTGCGGG CATCACCCTT GCCAATGAAT TATTAGCCTC AGGCAAACGC
GTTTGTATTG TTGAAGGAGG CGATGAAACC TTTACAATGG ACTCACAGAA TCTTTATTCG
CCCGCCGTGC AACCCACCGA ATATGAAGAT CCCACTTATG ACCGATTACG ATTTTTAGGT
GGCTCTAGTA ACCATTGGGA GAATAGCACA TCTGAATTCC ACCCCAGCGA CTTTAAAACA
AAAGATTGGA TTGCCCACAG CGGATGGCCA ATCAGCTTCG ATGACGTTAA GCCGTTCTAC
AGCCGCGCAG CACTCTACTG TGGCACGGGC AGTGACGGTT ACAATACAGC TCATTGGTCA
AAGCACTTTG GCAAAACAGA CATCTTCGAG TCGTCACAAA AAATCAACGC TAATATAGTT
AAAGCAGCTA TCCCTCCTGT ACATTTTTTT TCCAAATATG GCATGCCTCT AAAAGAGTCG
CAAAATGTCA CAATATTTAA AAATGCAAAT TTAGTCGACT TGAGCTTTAA TGCACAAACT
TTGGCTGTCG AATCTATCGA CTTTTCTAAT TATTCAGATG TAAAACATAC TGTTGCTGCA
GACACATTCA TCCTATGTCT AGGTGGTATT GAAAATGCGC GTTACATGCT GATATTTAAT
GAAAAATATA AGGACGCTCT AGGGAACAAG TCTAAAAATG TTGGGCACTA TTTCATGGAT
CATCCCGTTT TACGTGCTGC TAAGTTGTAT CCAAAAAAGA AAGATGACTT TGCTCTTTTC
ACTATGCGCG AACACATTGA CGAGCGCTTT ATCAATGGCT TTATCGAGAT GAATGAGTCC
ACGCTTAGCC AGGAAGAAAT CAGTAATATA CGTGTACCAC TTTTTGAAAA GTCAAACTTC
ATTATTTCAG AAGGTATCGA ATCGTTCCAT GTTTTGGGCT CAGCGATAGA GCAAGAGGCT
ATTCCTGACT ATTTTGGTCA ACACATGATG AATGTGCTGG GTGACATAGA CATGGTTGCT
GAGGCAGTGT CACGTAAAAC ATTCAGTAAT AAGTTGTTTG ACTACGCTGA TGACTTTGGT
GGATATGATT TAGCCATAAT GATTGAGCAA ACCCCCAAGT ATGATAACAA GGTATTTTTA
TCCGATGAGG TAGATAAGTT AGGATTGAAG AAAATTAAAA TCGACTGGAC TCTGCATGAT
GACGACATAA ATAGAATGTG GAAAGCTTTA GATGTGATGG CCAAAGAAAT AGGAAGGTTA
AACGTAGGAA GACTTAAAGT AATGAAAGAA TACGAAGAGC GTCTTCGCAG CGAGAAACTT
TTCTTCAGCC ATCACCATAT GGGAACAACT CGAATGGCTG ATAACATTCA AAACGGTGTA
GTTGATAAAA ACCTAAAAGT TTTTCATACA AACAACTTAT ACATTGCAGG TAGCTCTGTA
TTTCCTACAG GAAGTCATGT CCCTCCAACC TTGACCATAA CTGCTTTAAC CATCAAACTA
GCTGAACACC TACTAACAGA GGCCGTCGTA TGA
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| Protein sequence | MIIDANTLSE STKHVYHYCI LGGGVAGITL ANELLASGKR VCIVEGGDET FTMDSQNLYS
PAVQPTEYED PTYDRLRFLG GSSNHWENST SEFHPSDFKT KDWIAHSGWP ISFDDVKPFY
SRAALYCGTG SDGYNTAHWS KHFGKTDIFE SSQKINANIV KAAIPPVHFF SKYGMPLKES
QNVTIFKNAN LVDLSFNAQT LAVESIDFSN YSDVKHTVAA DTFILCLGGI ENARYMLIFN
EKYKDALGNK SKNVGHYFMD HPVLRAAKLY PKKKDDFALF TMREHIDERF INGFIEMNES
TLSQEEISNI RVPLFEKSNF IISEGIESFH VLGSAIEQEA IPDYFGQHMM NVLGDIDMVA
EAVSRKTFSN KLFDYADDFG GYDLAIMIEQ TPKYDNKVFL SDEVDKLGLK KIKIDWTLHD
DDINRMWKAL DVMAKEIGRL NVGRLKVMKE YEERLRSEKL FFSHHHMGTT RMADNIQNGV
VDKNLKVFHT NNLYIAGSSV FPTGSHVPPT LTITALTIKL AEHLLTEAVV
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