| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1170 |
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| Symbol | |
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| ID | 4172576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1411599 |
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| End bp | 1412234 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638054177 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_660750 |
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| Protein GI | 109897495 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | [TIGR03027] putative polysaccharide export protein, PEP-CTERM sytem-associated |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGACTA ACAAAATAGC ATTCTTCAAT TTAGTATTTT TATTCATTTT AACCTTAGCA
GGATGCTCAA GCAGTAATAG TAGCCTTCCT AATGCCTCAA CCTATCCTTC ATTGACTACT
TCGGTAGGCA ATTATCAGTA TTTAATTGGC CCTGGCGATA CTTTATCCAT ATTCGTTTGG
CGAAACCCCG ATATCTCTGG CAGCTTTATC GTTCGTCCAG ACGGTAAAGT CACGACCTCT
TTGGTAGAAG ACATCGAAGT AACTGGTAAA ACCCCATACG TACTTGCTCG AGAATTGGAA
GAATCTCTAG GTAAATTTAT TAACAGTCCT CGCGTGACAG TCAGTGTCAC TCGTTTCGCT
GGTCCTCTAA GTGAACAAGT TCGTGTCATT GGCGAAGCCA CAAACCCAAG CGCGATTAAT
TACACCCAGC AAATGACATT ACTGGATTTA ATGATTTCGG TCGGTGGCCT GACAGAATAT
GCTGCTGGTG ATAACGCCAA GTTAATTCGT ACGATAAACG GTAAGCAACA AACTTTTGGT
ATTAATATCG ACTCATTGAT ACGAGACGGC GACATTGCAC AGAATATTGA TATATTACCC
GGTGACATCA TTATTATTCC TGAAGCTTGG TTCTAG
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| Protein sequence | MKTNKIAFFN LVFLFILTLA GCSSSNSSLP NASTYPSLTT SVGNYQYLIG PGDTLSIFVW
RNPDISGSFI VRPDGKVTTS LVEDIEVTGK TPYVLARELE ESLGKFINSP RVTVSVTRFA
GPLSEQVRVI GEATNPSAIN YTQQMTLLDL MISVGGLTEY AAGDNAKLIR TINGKQQTFG
INIDSLIRDG DIAQNIDILP GDIIIIPEAW F
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