Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1150 |
Symbol | |
ID | 4173201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1391736 |
End bp | 1392875 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638054157 |
Product | signal transduction histidine kinase, LytS |
Protein accession | YP_660730 |
Protein GI | 109897475 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3275] Putative regulator of cell autolysis |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGAGTTTTC GCAAATCCCT TGGCGAAATA GGGGAAGCAA AACCTAGTTT CTGGACATTG CACTTATTTG GCTGGTCGTT TTATGTGCTG ATTTTTACCA TTGAGTATGC AGCATTCAAT CCTTATGCGG CGAATGCTAA CTACTTAATC GTAATGCCTC TGTTGTTTTC AGGATTAGTT GGTGGGCTCC TGACATGGCC GCTGCGTTAT ATTTATGGGC ATTTATCAAA GGGTGCACCA CTGCAAGTAT TGTTAGTGAT TATTACTGTT TGCATGCTGA TTGCCGTAAT TTGGACGCCC ATCAAAAACT TACTGCTGAT GTACTTTTTC GATCACGTAA CCTTGTACGA CTTGTATTTA GGCAATCAGC CCGAAGGTTT TCATGTAGGG GAGTTGTTTT TAACCGTTAC CTATTCGTTT TTTATGATTA TGGTATGGAG TTGTTTGTAC TTTGGGATTA ATTATCATTT CAAGTTATTA CATGAAAAAC AGCTGCATTT AGAAGCTATC CGCTTGTCTC ATGTGGCCCA AATTAAAATG TTGCGCTATC AAATTAATCC GCATTTTCTA TTTAATACAT TGAATGCTAT TTCGACGTTG GTTTTGCGCG GTGATAAAAG TACTGCGAAT AAAATGCTAG TCGGCTTAGC GACCTTTTTA CGCTTTTCAC TGGATAACGA CCCTGAGCAG AAAATCCGTT TGCGTGACGA GATAAAAGCT TTGATGCTTT ATTTGGATAT TGAGAAAAAG CGCTTTGCTG AGAGACTCAA TGTTCATTTT GATATTGAAG CGGCCACTAA TAATCTACTG GTACCCGGCT TGTTATTACA GCCATTAGTA GAGAACGCGA TTAAGTATGC TATTGCGCAG ATGGAAACCG GAGGGATTAT TGAAATCAAT GCTAGAATCC ACAACAACTT GTTACATCTT ACGGTTGCAG TTAACGGTCC TAATTCACAT AGTATCCCCT CATCAACGGC GCAATTGCGC GAAGAAGGCC AACGAGGCGG AGTCGGTTTG AAAAACGTAA TGGAACGTTT GCAGGTACTT TATGCCGAGA ATCATCAATT TTCTATTCAA AAAAGCCCGC ATTCAGGTTG CGCTGTAAAT ATTGTGTTGC CTGTGGAACT GCGCGCTTGA
|
Protein sequence | MSFRKSLGEI GEAKPSFWTL HLFGWSFYVL IFTIEYAAFN PYAANANYLI VMPLLFSGLV GGLLTWPLRY IYGHLSKGAP LQVLLVIITV CMLIAVIWTP IKNLLLMYFF DHVTLYDLYL GNQPEGFHVG ELFLTVTYSF FMIMVWSCLY FGINYHFKLL HEKQLHLEAI RLSHVAQIKM LRYQINPHFL FNTLNAISTL VLRGDKSTAN KMLVGLATFL RFSLDNDPEQ KIRLRDEIKA LMLYLDIEKK RFAERLNVHF DIEAATNNLL VPGLLLQPLV ENAIKYAIAQ METGGIIEIN ARIHNNLLHL TVAVNGPNSH SIPSSTAQLR EEGQRGGVGL KNVMERLQVL YAENHQFSIQ KSPHSGCAVN IVLPVELRA
|
| |