| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1113 |
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| Symbol | |
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| ID | 4172288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1344290 |
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| End bp | 1345309 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054119 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_660693 |
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| Protein GI | 109897438 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGACA CATTTGGTGC CACGGAGCCT GCGGTGCCGA CTTACTTCCC CAGTGCACTT
TTCCGTTGGT TGCTAAGCGA AGGCTATCAA GCAGATGCGT TACTCGTAGA CTTACCTTTC
ACTGAGAAAG AATTTGAACG AGGCGAAGTG AACGTCACGT TTAACCAGCA CAAAGCGTTT
ATTACCCGCT GTATCAACGT TACGCAAAAC CCTCGTTTAG GGCTCGCATT CGGCAAACAC
CTAAAACTTA CTGACCTCGG TTTACTTGGT TACGCTGCAT CGAGCAGTGC AAGTTTGCGT
GAAGCATTGC AGGTCATTGT GGATTACTTT AAGTTACGCG GGCCACTGCT CAAGTTAACG
TTAAACGTCA GTGGCGAAAA GGCAATCTTA GAGGTGTTTG AAGTCTTAAA TTACGACACC
ATCCGCGCGT TTATGTGTGA AGCGGCTTTA GTCACAATTC GTAATATTAT TAAACTGTTA
GCAGGCGATG ACATTGTACA ATACGCCACG GTTACTTATG TAAAACCGGA TGATTGGGAC
GCGCAATTAA GCCCCCTAGC ATTCAAATTT AACCAAGCGC AACACAGTGT ACATTTTGAT
GCGATACATC TTAGTGCACC TTTGGGCAGT GTTGATATCA AAACCCAGAT AGTGATCAAA
CAACTGTGCC AGAACATGCT TGCAAAAATC AGCCAGCAAG AAGGGTTAAT TACACGATTA
TCACACGTTA TTTTGCGTCA ACCAGATCAG TTTCCTAAAC TCGAGGAAGC GGCTAAGGCA
CTCGCCACAT CACCACGTAC GTTGCGCAGG GAGCTACAAA GTCTCGGAAC GACATATCAA
AAAGAGTTAG ACGTAATACG TAGACGCATT GCTATGGAGT ATTTGAGTAG TACTACTTTG
CCCATTGAAA CGATTTCCCA GCGTTTAGGC TACATAAATG CGCCCAGTTT TGCTCGAGCA
TTTAAACGCT GGACAACCCT TTCTGCCAGC CAATACCGCA ATCGCTATAA CCTTTTTTAG
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| Protein sequence | MRDTFGATEP AVPTYFPSAL FRWLLSEGYQ ADALLVDLPF TEKEFERGEV NVTFNQHKAF
ITRCINVTQN PRLGLAFGKH LKLTDLGLLG YAASSSASLR EALQVIVDYF KLRGPLLKLT
LNVSGEKAIL EVFEVLNYDT IRAFMCEAAL VTIRNIIKLL AGDDIVQYAT VTYVKPDDWD
AQLSPLAFKF NQAQHSVHFD AIHLSAPLGS VDIKTQIVIK QLCQNMLAKI SQQEGLITRL
SHVILRQPDQ FPKLEEAAKA LATSPRTLRR ELQSLGTTYQ KELDVIRRRI AMEYLSSTTL
PIETISQRLG YINAPSFARA FKRWTTLSAS QYRNRYNLF
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