| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1109 |
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| Symbol | |
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| ID | 4173638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1337108 |
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| End bp | 1338571 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054115 |
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| Product | cold-shock regulated carbon starvation protein A |
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| Protein accession | YP_660689 |
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| Protein GI | 109897434 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0159914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCATTT TTTTTATTTG TATCACTATC TTGATCCTCG GTTATAAGTT TTATAGCCCC
TTTGTTGAAA AACAAGCAGG GATCGACCCC ACGGTTGCCA CGCCACAAAC TCGCTTTAGC
GAAGGCGTGG ATTATGTGCC TATTCACCCG GTACGTGCGT TTCTGATTCA GTTTTTGAAC
ATCGCCGGTG TTGGGCCTAT CTTCGGGCCG ATATTAGGTG CTTTATACGG TCCGGTCGCA
TTAGTGTGGA TTGTGATTGG TAATGTGTTA GGCGGCGCTG TGCATGATTA TTTCTCAGGT
GTGATGAGCA TCAAAGAAGA TGGCAAGAGT CTGCCTGAGA TTGCTGGGCA CTATTACAAT
GTGGTCTTTA AGGGATTCAT GTTGATATTT ACCGCTATGC TCTTATTTTT TGTGGGGGTG
GTGTTTATCA TGAGTCCGGC GGGTCTATTA AGTAACTTAG ACTCGTTTCA AGGGACCATA
TTGGCGGACA ATACCTTCTG GGTATTAGTG ATTTTGGGTT ACTACTTTTT AGCGACCTTG
TTACCTATCG ATAAAATTAT CACTAAGTTT TACCCAATCT TTGGTTTATT GATGATTGTA
ATGACCAGTA TGATTGCCGT GGCCCTACTT ATTGATGCGC CGCACCTGCC GGTTACCGGC
GATTTCTGGG CATACTTCGA AGCGGATCAT GCCCATGATT TCTTAGCTCC TAATCCTGAT
GGGTTGCCGA CTTGGCCCCT GTTATTCGTT ACTATCACCT GTGGTGCGAT CAGCGGTTTT
CACTCTACCC AAGCCCCTAT TATTGCCCGT TGTTTAACTA ACGAAAAGTA CGTGCGTCCA
GTTTATTATG GCGCCATGGT GTGTGAAGGT ATAGTGGCCT GTGTTTGGGC TCTAGCAGGT
ATCGCGGCCT TCCCCGAAGG ATACGCTGGT CTCAAAGCTA TGCTTGATAC AGGCGGACCA
GGTTTGGTCG TTAATCATGT AGCCAATAGT TACTTAGGTG TATTTGGCGG AATCATGGCT
ATTGTTGCGG TCGCGGTGTT CCCGATCACT TCTGGTGATA CAGCGTTTCG CTCGCTTCGT
TTGACGGTGG TTGACGCGTT TAACATTCCC CAAAGTATCC GTAACCGCTT GTTGCTAGCA
CTGCCTATTT TGACCATTGC CTATTTTATG ACAAAGTTAG ACTTCACGGT GATTTGGCGT
TACTTCGCGT TTTCCAATAT GTTGCTTTCA ACCAGCGTGT TGTGGTTAGC GACCAAGTAC
TTGTTTGACA GAGGCACCTT CCATTGGATT GCGAGTATTC CAGCTGTGAT CACCACTGGC
GTTACCATTT CTTATATTAT GACTGCGGCT ATCGGCTTTA ACTTATCACC AGATTTAGGC
AGGCCAATCG GTGCAGTTGT GGTGGTGATT GGTTTGATTT TGTTAGTGCT AGCACATAAT
AAACATAAAC AGGTTGCGGC TTAA
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| Protein sequence | MIIFFICITI LILGYKFYSP FVEKQAGIDP TVATPQTRFS EGVDYVPIHP VRAFLIQFLN
IAGVGPIFGP ILGALYGPVA LVWIVIGNVL GGAVHDYFSG VMSIKEDGKS LPEIAGHYYN
VVFKGFMLIF TAMLLFFVGV VFIMSPAGLL SNLDSFQGTI LADNTFWVLV ILGYYFLATL
LPIDKIITKF YPIFGLLMIV MTSMIAVALL IDAPHLPVTG DFWAYFEADH AHDFLAPNPD
GLPTWPLLFV TITCGAISGF HSTQAPIIAR CLTNEKYVRP VYYGAMVCEG IVACVWALAG
IAAFPEGYAG LKAMLDTGGP GLVVNHVANS YLGVFGGIMA IVAVAVFPIT SGDTAFRSLR
LTVVDAFNIP QSIRNRLLLA LPILTIAYFM TKLDFTVIWR YFAFSNMLLS TSVLWLATKY
LFDRGTFHWI ASIPAVITTG VTISYIMTAA IGFNLSPDLG RPIGAVVVVI GLILLVLAHN
KHKQVAA
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