| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1074 |
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| Symbol | |
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| ID | 4172613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1288942 |
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| End bp | 1289670 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054080 |
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| Product | PHP-like |
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| Protein accession | YP_660654 |
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| Protein GI | 109897399 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4464] Capsular polysaccharide biosynthesis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGATTGATC TACACAGTCA TATATTACCA GGAATAGATG ATGGGGCCCC TGATTTGGCG
GCCTCATTAG CCATGGCAGA GCAATCGGTT GCGGTTGGGG TAACACATAT GGTGTGTACC
CCACATATTC ATCAGAGCTA TTTCGACAAC GACATGGCTA CTATTTCTAA AACCTACCAA
GCGTTAGTCG CGCATTTACA ACAAGCAGGT TGCCCTCTTA AACTTTCATT TGGTGCTGAA
ATCCGCATTA CTCCAGATAT CATGATCTGG CATAAACAGG GCCAAATCCC GTTTATAGGT
AAGTGGGAAG ACAAAGATGC AATGTTACTA GAGTTACCCC ACAGCCACAT TCCCCCTGGT
ACTGACAATT TACTGCGTTG GCTAATTAAA CATCAAATTC AACCAATCAT TGCTCACCCT
GAGCGTAATA GAGATATTAT TGCTAGCCCA GATAAAGTTA TCGCGTTGAA GCGGACAGGA
TGTTTATTTC AAGCCACAGC GGGTGCTTTC ACTGGTCGTT TCTCTAAGCC AGTAAAGGAT
ACTGTTGAAC TATTATTAGC ACGCGATTTT ATCTCTTATG TTGCTTCAGA TACTCATAGT
ATCAACCGGC GACCAAACGA TATGGCGGAT GCTTTTATTG CAGTGACTGC ACTTAAAGGT
AATGAATACG CAGAGCGTCT GTTTAGAACA ACTCCTTGGC TACTCTCTCA AGGTAATGCA
TGGCAATAG
|
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| Protein sequence | MIDLHSHILP GIDDGAPDLA ASLAMAEQSV AVGVTHMVCT PHIHQSYFDN DMATISKTYQ
ALVAHLQQAG CPLKLSFGAE IRITPDIMIW HKQGQIPFIG KWEDKDAMLL ELPHSHIPPG
TDNLLRWLIK HQIQPIIAHP ERNRDIIASP DKVIALKRTG CLFQATAGAF TGRFSKPVKD
TVELLLARDF ISYVASDTHS INRRPNDMAD AFIAVTALKG NEYAERLFRT TPWLLSQGNA
WQ
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