| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0967 |
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| Symbol | |
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| ID | 4173816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1155298 |
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| End bp | 1157907 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053968 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660547 |
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| Protein GI | 109897292 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0133332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTA ATCACTTAAA ACTCACGGTG GTAGCCGTTG CTGTCGCATC CAGTTTGCAG
GTTCATGCTC AAAGCAATTC CGATACCAGC ATTGAAAGAG TAGAAGTAAC AGGCTCGCAC
ATTCGCCGAG GCGACTTAGA AGGCCCCTCT CCTGTCACGT CCTTGTCCGC TGAGGAAATT
GCCAACACAG GGGTCACTGA TTTAATTGGC TTGTTTACTA AGTTACCCAT TGCTGGGCAA
GGCACGTTTT CAACCCAAGG CAACAGTAGT GACGGCACAG GTAATGGCGG CTCTAGTGTT
TCTCTGCGTG GACTCGGAGC CGATTCAACC CTGATATTGG TTAACGGTCG ACGAGTCTCT
GTATCGCCTT TTGCCAACTC GATCGATACC GCCTTCGTGG ATATCAATAA CATTCCCTTA
TCAGCCATCA AGCGAGTAGA CATTTTAAAA GACGGAGCCT CAGCTACCTA TGGCTCTGAC
GCCATCGCTG GCGTTATCAA TATCATCATG AAAGACGATT TCGACGGTTT AGAATTGTCG
GGAAAATATG GTGATACCGC TGATGGAGGA GGTGCAGAAT CAAACGCAAG TTTGCTGTTT
GGTACTAGCT CTGACAAATC TAGCCACACC TTTGTATTAG ATTATTTCGA TAGAGAAGAA
ATACTCTATG CGGATCGTGA TTACGCAAGC TCATCTAATC AGTCCGCTCT TAGGCCAAAT
GATCCCTACG CGACTGATTT CAGAAGCTCA GCTGGCTACC CTGGGACCAT TGCCCTTGCC
TCGGATTCCA CAGTGCGCTT ACCTGACACT TTTGGAAATG ATGTATGTCC AGCTGACCAA
ATAGTGGGGG ATTTATGTCG TTATGATTAT GCACCGTTTA GTTCGTCGAT ACCGGCATCA
GAGCGCGTTA GCTTTATGTA CATGGGTAAG TTTGAGATCA ATGACGATGT ACGCGCATTT
ATCGACTTAA ACGGACAAAA CTCAAAAACC ACGATCCGTG GTGCTGGTAG CCCAAGCTTC
AATGAATTGT TTATGTCAGG GGACAATATT AATCACCCCT TTGCTGACGA CCCTACACAT
CCTTTCTATC AACAAGATTT AACTATGCGC CGACGCACAG TTGAAATAGG CAACCGAGAA
AAACGAGTGG ATTCTGATTA TTATCGCACG GTAATGGGTC TTGAAGGTGG GTTCGGTGAC
TGGGATTGGG AAGTCGCTTA CAGTTATATT AAAAGTGATT CAATTGAGAG AGGTGTTAAT
GGCTTTCCTA ACTCTCGACG CACCCAAGAA GCCATAGACA GTGGTTTATG GAACCCCTTT
GAGCCTTCAA GCAATTCCCA AGAAGCACTC GATTACATTG AAACTCAAAC GACTCGCTAT
GGTAAGTCCA CCAGTAAATC GTTTGATGCT CAAGTGTCAG GTCCGATCAT GAATATGTCA
GCCGGCGAAT TGATGTTGGC AGTTGGCGCT GAGTATCGAG AGCAAGAGAT CAGTGATAAT
CCAGATGATC AGTTCATACG AGGCGAAGTG TTTGGCACTG AAGCAACCCA GGCCAACGGC
GAACGGGACA ACACGGCTGT ATTCGCTGAA CTTGCGATCC CTGTCACAGA AACCTTCAAT
GTTCAGTTAG CCGTGCGCCA CGAAGATTAT AGCGATTTTG GCACAACGAC TGATCCCAAA
GTGGCTTTTA TCTGGACACC GATGGATGAA TTGTCTATCC GAGGCTCTTA TGGCACCGCC
TTCCGTGCGC CGTCTTTACA TCAAATTGGG CTGGGCAGCA CGGATGAGTC ACCTAACTTA
GTCGATAATG TTCGTTGTGA TGCAGTGGGC AATGTTAATA AGGCCTGTGA GCCACAAGAG
TACACTGCGG TGTTAACTGG CAACCCCGAC CTTGGCCCTG AGGAGTCAGA AAGCTATAAC
TTTGGTGTTA TTTATGAAAT CACCCAAAGC ATTGATTTTT CGTTAGATTA TTACAATTAT
GACATTGAAA ATGTGATCAA TAAAGACACC CAATTTAAGT TTACCACCCA AGGGAGTAAT
CCAGAGGTGG TGGAACGATT GCCATCTAAT ATTCCAGGCG ACCCAGGGGA AGTAGTACGT
ATCTTCGACC AGTTCGAAAA TTTAGGGAAC ATCAAAACCT CAGGTCTTGA CCTTGATTTA
GGCTATAAAA CTGAAACTTC GTTAGGTGAC TTTAAGATTA ACTACATTTT AAATTATGTA
TTGAACTATG AAGATATTCG CACTGGTGGT CGCATTGATA CCCAAGAAGG ACAGTTCGAA
CAACCCGAAG TGCGCTGGAC AACTGCAGGG TCTTGGGTAA AAGACGACTG GAGCGCGAAT
GTTGCGGTTA ACTACATCGG CGAATTTGAA CAAGATGCCT CGGTGCGAGT GCAATCCGAC
GGCACAATAT TGCCTGATAT TGATTCTATG ATCACAGTAG ACACAACCGT TAATTTCAGC
GGCATAGACA ATACAATATT AACCCTTGGG GCAACTAACC TGTTCAATGA AGAGCCTCCC
TTTAGCTACC ACGATTATAT GGGGCATGTA GTGGGCACCC ATAACTCGCA AGGTCGCTTC
GTGTACGTGC AAGCAACTTA TAAGTTCTAA
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| Protein sequence | MKFNHLKLTV VAVAVASSLQ VHAQSNSDTS IERVEVTGSH IRRGDLEGPS PVTSLSAEEI
ANTGVTDLIG LFTKLPIAGQ GTFSTQGNSS DGTGNGGSSV SLRGLGADST LILVNGRRVS
VSPFANSIDT AFVDINNIPL SAIKRVDILK DGASATYGSD AIAGVINIIM KDDFDGLELS
GKYGDTADGG GAESNASLLF GTSSDKSSHT FVLDYFDREE ILYADRDYAS SSNQSALRPN
DPYATDFRSS AGYPGTIALA SDSTVRLPDT FGNDVCPADQ IVGDLCRYDY APFSSSIPAS
ERVSFMYMGK FEINDDVRAF IDLNGQNSKT TIRGAGSPSF NELFMSGDNI NHPFADDPTH
PFYQQDLTMR RRTVEIGNRE KRVDSDYYRT VMGLEGGFGD WDWEVAYSYI KSDSIERGVN
GFPNSRRTQE AIDSGLWNPF EPSSNSQEAL DYIETQTTRY GKSTSKSFDA QVSGPIMNMS
AGELMLAVGA EYREQEISDN PDDQFIRGEV FGTEATQANG ERDNTAVFAE LAIPVTETFN
VQLAVRHEDY SDFGTTTDPK VAFIWTPMDE LSIRGSYGTA FRAPSLHQIG LGSTDESPNL
VDNVRCDAVG NVNKACEPQE YTAVLTGNPD LGPEESESYN FGVIYEITQS IDFSLDYYNY
DIENVINKDT QFKFTTQGSN PEVVERLPSN IPGDPGEVVR IFDQFENLGN IKTSGLDLDL
GYKTETSLGD FKINYILNYV LNYEDIRTGG RIDTQEGQFE QPEVRWTTAG SWVKDDWSAN
VAVNYIGEFE QDASVRVQSD GTILPDIDSM ITVDTTVNFS GIDNTILTLG ATNLFNEEPP
FSYHDYMGHV VGTHNSQGRF VYVQATYKF
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