| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0965 |
|---|
| Symbol | |
|---|
| ID | 4173814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1153561 |
|---|
| End bp | 1153809 |
|---|
| Gene Length | 249 bp |
|---|
| Protein Length | 82 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638053966 |
|---|
| Product | signal transduction protein |
|---|
| Protein accession | YP_660545 |
|---|
| Protein GI | 109897290 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[R] General function prediction only
[T] Signal transduction mechanisms
[Z] Cytoskeleton |
|---|
| COG ID | [COG5126] Ca2+-binding protein (EF-Hand superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.706266 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATC AAGAGACATT AGCGCCAGAA AAGGTCGCTG AAATTCGTAA AGAATTTGAT
TATTTTGATA CAGATAAAAA TGGCGAAATA GGCCTAACTG AATTCATTGA ATTGTTAACT
ATCATATCGC CAAAAACCAA GGCGAGTCAT GTCGAAGAAG GTTTTGGTTT GATTGACAAG
AACAATGATG GCTCAATCGA CTTCGAAGAG TTTTTGGAGT GGTGGCAGCA ATCTTGGTGG
GAATACTAA
|
|---|
| Protein sequence | MADQETLAPE KVAEIRKEFD YFDTDKNGEI GLTEFIELLT IISPKTKASH VEEGFGLIDK
NNDGSIDFEE FLEWWQQSWW EY
|
|---|
| |