| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0940 |
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| Symbol | |
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| ID | 4172147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1123645 |
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| End bp | 1125987 |
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| Gene Length | 2343 bp |
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| Protein Length | 780 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053941 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660520 |
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| Protein GI | 109897265 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAG CCAACCAATA TTTTCGTCCT ACTTTACTTA GCGTGTCGCT TGCCGCGTTA
TTCACCGTTA ACCCTGTATT AGCCCAAGAG GTTGATGACA ATGCAATGGA AGATGCGCCT
GAAAAAATTC AGGTGATGGG CCGCCGAATA TCTGAAACCG AAGTGGCGAT AGGAACGGGC
GAGGTAACTA ACACGCTGGC CGTGACCCGT GAAGCATTGC TGTCAGCCCC TGGGGGAATT
TCAGGCTTAA AAATGCTTGA GAGTCTACCG GGTTTTAACG TGCAAACAGA TGGGGCTCTG
GGTTTATATG AATTTGGTAA CTCGGTCAAT GTGCGAGCGT TTAACTTAAG CCAAATGGGC
TTCGTATTAA ATGGCGTGCC GATGGGGCGT TCAGACGCAT TTGGTGGTAG TCCGATTTTC
AGATACGTGG ACAACGAGAA CTTAGCCTCT GTAGTTGCTT CACCCGGTGC AGGAGATGTG
TCAGCGCCTA GTTATTCCAC ACTTGGCCCT ATCGCGTCTT ACTACTCGGT TGACCCATCA
GATGAGATGG GCGGTATGAT GTCACTAACC GTGGGAGATG ACGATTTACA GCGCTCGTTC
ATTAAATTAG AAACGGGTGA TCTCAATGGT TTTAAAGCGT TTGTGAGCCG CTCAAAAACC
GACAGTGATT TATGGCGCGG CCCCGGCACC ATTGACCGAG AACATATTGA GGCCAAAGCG
GTTTACGCGT TTAGTGCTGA TACCAAACTG TCATTTAATT ATGTTTCAAA CGACTTTTTC
GACTATGACT CACCCTCTGG CACCGAAGCC ACGTTTGATA ACGACTATTA CTACAGCTAC
CTAGAATCGA TCCCCGAAGG TTGTATCGGG GCGATGCCAC AAGTATATGA TTTCAATCAA
GATGGCTCGA TAAATGATAG CGACTTCACC CCTGTATTCA CTGGTAGCAA TTGTACAAGT
TACTATGAAG ACAGAGTGAA TGTACGAGAC GATCAACTCT ACTCTTTGCA ACTTGAAACT
TACTTAACCG ACAATCTGCA GTTTGCCGGT ACCTATTACT TTGAAGACAA GGATGGGTAC
GGCGTATCAC CTGATTCCTA TACAAATACC TTGGGTATTT ATGAACGCCA AGCCGCAGCA
GGGCTTGATG TAGTGCACCC GCGCGGGGTG CAATATGGAC TTTCTTCGGT GGGCGGTGAT
CGTAAAGGCT TTGTGGCTGA TTTTACCTTA GAGCTTGAAA ACAATGTGAT TGAGTTTGGT
GGTTGGCAAG AAAAAGACAC CTACAATCGA ACCCAACAAC GCTTGAACAA AACCGGCGGT
AGCGTCGATG GGGACGTGAT TTGGGATGAA GTTGCCTATT ACAGACGTGA TTATACTGCA
GTACGAGAAA CCACTCAGTT TTACCTGAAA GACACCATAA GCTTACTCGA TGATGCGTTA
AAGCTAGAGC TGGGTATTAA GTCTTTAAGT GTGGATTACA CCCTAGATGG CTATCGAGAT
TATGCGGATT ATGAAATAAA CAGTGAAGCT GGCTATGGTC CGCAATCTGT CGGTGGAGAG
TTCAGTAAAC ACTTTTTACC TTCTATCGGC GCTGTGTACA GCGTAAATGA CACGGATCAA
GTCTTTGCTT CTTACTCTAA AAACTATGCG CTACCCAGCG GCACCGACGA TATTTACGAT
AACGCCTTGA GTTTTGAGCC TGAAACACCT GAGGGGGAAG AAGCAGATAA CTTTGAAGTG
GGTTACCGAA CCAATCAAGA AACGTTTAAT GCCGCATTGG CACTTTTCTA CACGCGATTC
GATAACCGCC TGTTTGCCAG CAACGTTTTT AACCCCGCGA CTCAGCAACC AGAAAGTTTC
TACATCAACG GCGGCGCATC AGAAGCCTAT GGTTTTGAGT TAAGTGGTGT CTATCAACCC
GAGGCATTTA ACAAGCAGCT GTATTTGAAC GCTAACATAT CTTACAAAGA TGCTACCTTG
GCTGATGGTT TTGGCAGTAA TCCCGAAGGA AGCCGCTTAG CGGACAGCCC AGAATGGTTG
ATGACCGCTG GGATCACGTA TGAGCCAACA GAGTGGTTAG TGGCGAATAT GTCAGCAAAG
TATACGGGGA GCCGATTTAC CGATTACGCT GAAACCTATT CGATGGACAG TTACACTATT
GTCAGCGCGT ACGTGGATTT AGGCGGCGTC AATCCGTTTG GTATGCCGGA AAACGTGAGT
CTTCGCTTCA ATGTGGACAA CTTATTTGAC GAAGAAGTGT TGTCCTTTGC GTTTGTCGGC
TCGGCCTTTT ATCGCCCGCT TAATCCACGT AATTTTCAAG CCTCTCTAAC CGTGGCGTTT
TAA
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| Protein sequence | MKTANQYFRP TLLSVSLAAL FTVNPVLAQE VDDNAMEDAP EKIQVMGRRI SETEVAIGTG
EVTNTLAVTR EALLSAPGGI SGLKMLESLP GFNVQTDGAL GLYEFGNSVN VRAFNLSQMG
FVLNGVPMGR SDAFGGSPIF RYVDNENLAS VVASPGAGDV SAPSYSTLGP IASYYSVDPS
DEMGGMMSLT VGDDDLQRSF IKLETGDLNG FKAFVSRSKT DSDLWRGPGT IDREHIEAKA
VYAFSADTKL SFNYVSNDFF DYDSPSGTEA TFDNDYYYSY LESIPEGCIG AMPQVYDFNQ
DGSINDSDFT PVFTGSNCTS YYEDRVNVRD DQLYSLQLET YLTDNLQFAG TYYFEDKDGY
GVSPDSYTNT LGIYERQAAA GLDVVHPRGV QYGLSSVGGD RKGFVADFTL ELENNVIEFG
GWQEKDTYNR TQQRLNKTGG SVDGDVIWDE VAYYRRDYTA VRETTQFYLK DTISLLDDAL
KLELGIKSLS VDYTLDGYRD YADYEINSEA GYGPQSVGGE FSKHFLPSIG AVYSVNDTDQ
VFASYSKNYA LPSGTDDIYD NALSFEPETP EGEEADNFEV GYRTNQETFN AALALFYTRF
DNRLFASNVF NPATQQPESF YINGGASEAY GFELSGVYQP EAFNKQLYLN ANISYKDATL
ADGFGSNPEG SRLADSPEWL MTAGITYEPT EWLVANMSAK YTGSRFTDYA ETYSMDSYTI
VSAYVDLGGV NPFGMPENVS LRFNVDNLFD EEVLSFAFVG SAFYRPLNPR NFQASLTVAF
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