Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0934 |
Symbol | |
ID | 4172141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1113913 |
End bp | 1114839 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638053935 |
Product | TRAP transporter solute receptor TAXI family protein |
Protein accession | YP_660514 |
Protein GI | 109897259 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAGA TTTTAAAGAA TGGGATCCTA GGGTTAACGT GTTTGTTTTC ACTTAACACC ATAGCGGAAA CTTATACTAT TGGTACTGGT AGCCAGAGCG GTACCTATTA TCCACTTGGG GGTATGCTAG CCAAGGTCTG GAGCGAAAAT ATTGAAGACT TTGATATGCG AGCTGAAGTG ACGGCCGCTT CCGTAGAAAA TACCATCAAA GTTGCTACAA AAAAACAACT CGCAGGGATA GCCATGGGTA ATGTGGCTTT ACAAGCACAT GAAGGCGTTA AGCCTTTCCC TCGAAAAATG GATGTATCCG TTTTATTTGC TTTATATCCA AATGTAGTTC AATTCGTTGT ATCAGCGGAC TCAGATATAC ACACAATTCA AGATTTAAAA GGTAAACGTA TTTCATTAGG TGCACCAGGC TCTGGTACAC GCGTGAGTGC AACTAATATT CTTTTAGCTT TAGGCATAAG AGACAATGAT ATTGATGCCC AATCTCTAAA TTACACTGCA ACCACTAATG CTATTTCTGC CGGTCAAATT GATGCAGGTG TAATCGTAGG CAGCATAGGT GTTGGGGCAA TCACTGAATT GGCGTTCACT CATAAGATTC GAATTCTATC GTTTACACCA GAAGAGCTTA AAGCTGTCTC TGATAACAAT GCTTCATATC AAGCAATTGA AGTAGCAGAA GAAAGCTACA AAGGTGTTAC CGCATTTAGG GCACCAGCGG TATGGAATAT TCTTATCGTA AACAAAGCTC TTGATACCGA CCTTGCTTAT CAAATGACAA AAGTTGCTTT TGAGAACATG AAAAAAATCA ATCAGGTTAT TAGCGTCACA AAATATACGA CGCTTGAAAA TATGAACAGG CTAGACGGAA TCGACTTACA CCCAGGTTCG TTAAAATATT TAAAAGAACA AATGTAA
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Protein sequence | MSKILKNGIL GLTCLFSLNT IAETYTIGTG SQSGTYYPLG GMLAKVWSEN IEDFDMRAEV TAASVENTIK VATKKQLAGI AMGNVALQAH EGVKPFPRKM DVSVLFALYP NVVQFVVSAD SDIHTIQDLK GKRISLGAPG SGTRVSATNI LLALGIRDND IDAQSLNYTA TTNAISAGQI DAGVIVGSIG VGAITELAFT HKIRILSFTP EELKAVSDNN ASYQAIEVAE ESYKGVTAFR APAVWNILIV NKALDTDLAY QMTKVAFENM KKINQVISVT KYTTLENMNR LDGIDLHPGS LKYLKEQM
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