| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0887 |
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| Symbol | |
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| ID | 4172933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1049213 |
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| End bp | 1052923 |
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| Gene Length | 3711 bp |
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| Protein Length | 1236 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053888 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660467 |
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| Protein GI | 109897212 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00309149 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAACAC ATTTTAGATT AAACGCTTTA TCACTGGCGG TTATGACAAC TTTTCTGAGC
ACACATACTG TCGCTCAAGA GTCCGAGCAA CCACCAGCAG AGCCTGTCCA GTCAAAACTC
GCTTCAGAAG AAGATATAGA AGTCATTGAT GTGACGGGTT TTCGTAGCAG TTTGATGAAA
TCAATGAATG CTAAGCGATT CTCTGACACT GTCAGTGACT CAATTCACGC AGAAGATGTG
GGTAAATCTA CCGACCAAAA CATTGCGGAC GCGTTATCCC GCGTGACTGG TGTCACAGTA
CAAGAAGAGG CTGGCGAAGG AACACGTATT TCAGTACGCG GTGCTGGCCC ATCACTAAAC
CAGATTTCTA TCAACGGTGT GGCGTTAACT GGCGGCATTA GCAATGACGG TTCCAACAAC
AATGCAACCA ATAACAACAG TGTTGATTTA AGTTCTTTCT CATCAGATAT TTTGTCCTCA
ATTGACGTGG TAAAAACTGC GGCCGCCGAT CAAGATGAGG GCTCCCTTGG TGCAAACATC
GTACTTCGAA CCGTCAGACC ATTAAACCTG AAAAAGCCCA GACGTTCATT CACCATTGAA
GGGCGTTATA ACGAGTTCGC TGACGACAAC GATTTCAGAA TTAACGGTAG CTTCGCTGAC
AAGTACTTCG ATGAAAAATT GGGATTTATC ATTACTGCCT CCAGAGACGT TCAAAACACG
CGGCAGGACA GAATTTCAAC GGACTTTGAA ACTGGTGCAA TTCCAATAAA TGACTTAAAT
GACGGTGGGC GTACCGCAAC CGATTTAGCT ACAGGTCAGC CTATTCGCGT ATTGGGTTAT
CAACGCGACG ATCAAGGAAA CGTATTACGA GATGATAGCG GACAAGCGTT AGTCAACCCT
ATTGAGAGCT TGGTTGATTA TGACCCAACA ACGCAACAGC TGGTTGAAGG CGACCTTTTC
GTATTGGCAA GAGACTCAGT CAATTTTGGT CTTAATACGG ATAAGCGAGA ACGTTTTTCA
CTGTCAACGG GGGTGCAGTA CCGCCCTGAC GAAAAAACAG ATATTCAATG GGATGTGACA
TACACCAAAC AAGATATTCT GCAAGATAAC CATAGCGTAA ATATGAATAT TTCTCCGTTA
GTGTTGATCC ACCCAGATGA TGATAATACC GCACTCAATG TGGTTGATCT TCGCACCAAT
ACCCTAGAAC GTTCAACGAG TCGCTCGATT GGCGGTACCA CAAACCGCAC AACAGGTCTG
CGTGAAATCG AAACAAAGGT CAGCACATTG GATTTCACTC GTCATCTTAC GGATAACCTC
ACTATGAACA TAGTGGCCGG ATATTCTCAG ACCGTTGATG AAACGCCTGA TGATGATGAA
GAAAATAGAT TCCTTTCAAT CGGAACAGCT CAATGGGGAA CCGCCGGAAG AAATGCCGTA
GAAGCCCAGC CGGACGACAT ACTTGAGCTT GTAGGTTACG ACTGCTCAAC GGGCTCGACA
GCAGACTGTG ATTATTTTAG TGGATCAACA CTGGCGCAAT TTGATGCCTT CGACGGCTCT
GTGACGTCGG TAACTAGTCG CTTTAACCCT TTCGATTTAG AACACAATCA TTTAGGTCAG
TTGTTATTTC GTAAAAACAA GCTGACTGAC ACCAACAAGT CCGTATTCTT AAACTTTGAT
TGGGTGCTGG ATTACGAACA TGTGAGATCC GTTGAATTTG GTGCCAAATG GGCTGACCGC
TCACGGGATG TGAATATTGA GAACACCCGT ATCACCAATG GCGAAGATCT CATCGATGTT
GATGACCCAT CCGCACCATT TGAAGTCAGA GGCCTGGCGA CCATTCGTGT TGCCGACATC
ATCAGTGGCG AAGCATTCCC TTATGATAAC TTTGGCGAAG ACTTGCAGGC GAATCGCAGC
AACGCGTTAT TTGGTGGATG GCCATTGTTG GATGCAGAAA AAGCCTTAGA ACTTGTCGGC
GGTAAAAATG CTGGTGAACT TGGGGTTAAC CGTTCACGTG CCGGTAGCCG AGAAATTGCA
ACCGAAACGA TGGCAGCCTA CGTTAAAACT AACTTCGAGT TTTTCGATGG TAAGCTTACA
GGTAATATTG GCGTGCGCTA CGTTCGTGAC GAATCGGACG CGTCAGGTCT TGGTAGTATC
AATTATATTC GCGCCCCGCA AATGCTGGAC CCATACGATC TAATCGTTAC GCGCGGGCTG
GCTAATATGA GTAATCCCGC TTGTCCTGAA GCCGTCATCA GCAACAACGA TACACGTTTT
ACACCAGAGA ATGACGACCA GTTGAGAAAC TGTTGGGCGT TTGCAGTGAC ACATGGCTAC
AACTTTAATA ACCAAGCCAC CATTCCTTAC GATACAGCCA CAGGGCAGTT CCTTATCCCT
GGCGCAGATG GCCAAGTTGG CCCGGATGTT AACCGTATAC TATTCGTAGA TGGTTCAGGA
AATATCGTTA CCAGTAATGA ACTGCCAGCA CAAATTTACG ACCAAAACGG CAACCTTGTT
CCCACTAGCG CATCTGAATG GGCAAGATTT AATTCAAACG GTTTGATTTG GCCATTCCTA
GACAGAAGCA CCGCCTTTAC TGGGCCTAAT GGCACTGGGC AAGAAGTGCA ACAACGGGAA
GCACCGGTGT CGGACTCAGG TACTAACGAG GCTTGGCTGC CTAGCTTGTC CCTTAACTAT
GCGTTGAACG AAGAGACAAT ATTACGTTTT GCAGCAACAA AAACCATGAC TCGCCCGAGC
TTCGATTCGT TAAATCCGGG TAACAGTATT CGCGAGCAAC AATTCGGAAC CGGTAACGGA
CGCGCAGGCA ATACCCAGTT GAAAAACCTA ACCTCGACTA ACCTCGACTT CTCTTACGAG
TGGTATTTCA ATGAATCAGG CTTGTTATCC GCGGCACTGT TTTACAAAGA TATGCAAGAT
TTTGAAGAAA CCATTATCAC GCCGTTCCAT TATAAAGATG TACGCGATCA GATAGATTTA
GAAAGTGCTG ACCTACTACT CGATTTTGAT CCCAATCGCA CCCCTGGTGA CGAAGATAAT
TGTCATCCAT TGCGCTACGC CGCTGGCTTT TTCGATAAGT GGACGATTGA GTGCGATGTG
GTCAATGTTG CCACTGTAAC TAATGGTGAC GGCGCCACGA TTAAAGGCAT TGAGTTAGGT
TACACTCAAA ACTACACCAT GTTACCAGGG GTATTATCTG CTCTCGGGAT AAGCGTTAAT
TACACCTACC AAGACTCAGA ATCAGAAGCA CAAGAAATTG GCTCAACAGG TCGTTTCTTG
CGCCCACTAC CACAGCCGTT TACGCCGAAA CATTCTGCCA ACATGACCAT TTACTGGGAA
AAGGACGGCA TCCAACTGCG CTTGGCCAAT CGCTATACCG ATGTGCAAGC GGTTTCAAGG
AACAATGGCG GGGCAATATG GCAAGAAGCG AGCTCTCGTC TTGATTTCAG CGGCAGCTAC
GCCATCAACA AAAATTTTAC TGTGACCTTC AATGCGTTGA ACTTGACCGA CGAAACCATG
CGTAATTTTT ACACCTCCTC AGGTACGGTT GATGCGACCA ATTTGAATTC TCAAGAAGTG
GTGTTGGACG AAGGCAATGT TTTTGATGAC AGCGGCATAA CGACAAACAG AACCGTTGCT
CTATTCAAAA CTGGGCGTCA ATTCCGTATC GGTTTACGCG GCACTTTCTG A
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| Protein sequence | MRTHFRLNAL SLAVMTTFLS THTVAQESEQ PPAEPVQSKL ASEEDIEVID VTGFRSSLMK
SMNAKRFSDT VSDSIHAEDV GKSTDQNIAD ALSRVTGVTV QEEAGEGTRI SVRGAGPSLN
QISINGVALT GGISNDGSNN NATNNNSVDL SSFSSDILSS IDVVKTAAAD QDEGSLGANI
VLRTVRPLNL KKPRRSFTIE GRYNEFADDN DFRINGSFAD KYFDEKLGFI ITASRDVQNT
RQDRISTDFE TGAIPINDLN DGGRTATDLA TGQPIRVLGY QRDDQGNVLR DDSGQALVNP
IESLVDYDPT TQQLVEGDLF VLARDSVNFG LNTDKRERFS LSTGVQYRPD EKTDIQWDVT
YTKQDILQDN HSVNMNISPL VLIHPDDDNT ALNVVDLRTN TLERSTSRSI GGTTNRTTGL
REIETKVSTL DFTRHLTDNL TMNIVAGYSQ TVDETPDDDE ENRFLSIGTA QWGTAGRNAV
EAQPDDILEL VGYDCSTGST ADCDYFSGST LAQFDAFDGS VTSVTSRFNP FDLEHNHLGQ
LLFRKNKLTD TNKSVFLNFD WVLDYEHVRS VEFGAKWADR SRDVNIENTR ITNGEDLIDV
DDPSAPFEVR GLATIRVADI ISGEAFPYDN FGEDLQANRS NALFGGWPLL DAEKALELVG
GKNAGELGVN RSRAGSREIA TETMAAYVKT NFEFFDGKLT GNIGVRYVRD ESDASGLGSI
NYIRAPQMLD PYDLIVTRGL ANMSNPACPE AVISNNDTRF TPENDDQLRN CWAFAVTHGY
NFNNQATIPY DTATGQFLIP GADGQVGPDV NRILFVDGSG NIVTSNELPA QIYDQNGNLV
PTSASEWARF NSNGLIWPFL DRSTAFTGPN GTGQEVQQRE APVSDSGTNE AWLPSLSLNY
ALNEETILRF AATKTMTRPS FDSLNPGNSI REQQFGTGNG RAGNTQLKNL TSTNLDFSYE
WYFNESGLLS AALFYKDMQD FEETIITPFH YKDVRDQIDL ESADLLLDFD PNRTPGDEDN
CHPLRYAAGF FDKWTIECDV VNVATVTNGD GATIKGIELG YTQNYTMLPG VLSALGISVN
YTYQDSESEA QEIGSTGRFL RPLPQPFTPK HSANMTIYWE KDGIQLRLAN RYTDVQAVSR
NNGGAIWQEA SSRLDFSGSY AINKNFTVTF NALNLTDETM RNFYTSSGTV DATNLNSQEV
VLDEGNVFDD SGITTNRTVA LFKTGRQFRI GLRGTF
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