| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0876 |
|---|
| Symbol | |
|---|
| ID | 4172005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1033828 |
|---|
| End bp | 1034814 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638053878 |
|---|
| Product | beta-lactamase-like |
|---|
| Protein accession | YP_660457 |
|---|
| Protein GI | 109897202 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1234] Metal-dependent hydrolases of the beta-lactamase superfamily III |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.440271 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGA CAAGAATTAT TGGCGGCATG TTGCTCACGA TAAGTTGTAT CAGTTGTGCA
ATAGCTGATA GCGCCAGTGA TGTAAAAGAT GAATGGATTA CCCTGGGCAC AATGGGAGGT
CCTATACCCC ATGCGACACA TTCACAACCG TCGAACGCTT TATTTGTTAA CGGCCATACT
TATATTGTCG ACGCGGGCGA TGGCACAGTG GGCCAGCTAA CCAAAGCGGG CTTGAAAACA
ACCGATGTTG ACGCAGTCTT TATCAGTCAC TTACATTTTG ACCATACCGG CGGGTTACCC
GCATTATTAA GTCTTCGCTG GCAAGTGAAT GCAGGGAATG AATTGACTGT TTATGGCCCC
CCTGGGATCA AAGAAACGGT GGACGGGATC TTTGCATTTA TGAAATACGG CGCGGCAGGC
CATTATGGTG TACCAGGCCA AATACCAGAA CCTGCAAATC GCAAGGTCAA CGTGGTTGAG
TTGACAGACG GTGATAAGGT CAGCCTAGAG GACTTTACCT TAACAGCAGT GCGAAATACT
CACTTTAGCT GGCCAGAAGG CAGCGATGAG TGGAAGAAGT ACCAGGCATT ATCGTTTAAG
TTTGAACTGG AAGATTACAC AGTCGTTTAC ACAGGAGATA CAGGGCCAAG CAAAGCGGTT
GAATTACTTG CTAAAAATGC TGATATGCTT ATCAGCGAAA TGATGGATGT TGAACATACA
GTTAATCTGG TAAAACGTGC GCATCCCCAC ATGCCTGCCC AGGCTTCTAA GCATCTTAGT
CAGCATTTGT CTACTCACCA CCTTACCTCA GGTGAAGTTG GCCAGCTTGC CGCAAACGCG
AACGTTAAAA AAGTTGTTAT TACCCATATG GCACCTGGGC TGACCGCGCC AGCTGAGTAT
AAAAAATATA GCAATGAAAT AGCGGCATTT TACCAAGGTG ACATTACTCT TGCTAACGAC
CTAGACAGAT TCTTACTGCA AAGATAG
|
|---|
| Protein sequence | MSLTRIIGGM LLTISCISCA IADSASDVKD EWITLGTMGG PIPHATHSQP SNALFVNGHT
YIVDAGDGTV GQLTKAGLKT TDVDAVFISH LHFDHTGGLP ALLSLRWQVN AGNELTVYGP
PGIKETVDGI FAFMKYGAAG HYGVPGQIPE PANRKVNVVE LTDGDKVSLE DFTLTAVRNT
HFSWPEGSDE WKKYQALSFK FELEDYTVVY TGDTGPSKAV ELLAKNADML ISEMMDVEHT
VNLVKRAHPH MPAQASKHLS QHLSTHHLTS GEVGQLAANA NVKKVVITHM APGLTAPAEY
KKYSNEIAAF YQGDITLAND LDRFLLQR
|
|---|
| |