Gene Patl_0844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0844 
Symbol 
ID4173985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp995709 
End bp996758 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content46% 
IMG OID638053847 
ProductRieske (2Fe-2S) region 
Protein accessionYP_660426 
Protein GI109897171 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGTGC AAAAATATCC ATTAAATACT TGGTACGTTG CTTGTACACC AGATGAAATT 
ACGATGGCCC CCTTCGCTCG TAAAATATGC GGTATCGCCT TAGTGTTTTT CCGAAATACT
CATGGAACGG TGGTTGCTCT AGAGGATTTT TGCCCTCATA GGGGGGCTCC TTTGTCCTTA
GGAAAAGTCG AAAATGGTCA ATTAGTGTGT GGTTATCACG GCTTACGCAT GGGTGACGAT
GGTGCTACTA AGGCAATGCC CAATCAACGT GTTCAGGCTT TTCCCTGTAT ACAACGTTAT
GCAGTCGTTG AGCGCTATGG GTATATCTGG ATTTGGCCGG GCGATAAAAG TTTAGCCGAT
GAATCCTTAC TGCCAAAGCT AGAATGGCCA AACAATCCAA ACTGGGGTTA TGGCGGTGGG
CTATATCATA TCAAATGTGA TTATCGCTTG ATGATCGATA ACCTGATGGA CCTAACCCAT
GAAACCTATG TACACGCCAG CAGCATAGGG CAGAAAGAAA TCGATGAAGC GCCCGTTACC
ACGAAAGTTG ATGGTGAAAG TATTGTCACC AGCCGGTTTA TGGACAATGT AATGGCACCG
CCTTTTTGGG CATCGGCCTT GCGCGCCAAT GATTTAGCCG ATGATATTCC TGTCGACCGT
TGGCAAATCT GTCGCTTCAA CTTACCCAGC CATATTATGA TAGAAGTGGG GGTTGCTCAC
GCAGGTAAGG GGGGTTACTT AGCGCCCAAA GAATGCAAAG CGAGCAGCAT AGTGGTTGAT
TTCATCACAC CCGAATCTGA TCATTCCATT TGGTATTTTT GGGGGATGGC AAGAGACTTT
AAACCCCAAG ATAGCGAGCT TACGAATTCA ATCCGCAGTG GACAAGGCGC CATCTTTGCC
GAGGATTTAG ACGTATTAGA GCGACAACAA GAAAATCTAT TACGTCACCC CGATAGGACA
CTTCTTAAAT TAGATATAGA TGCAGGTGGA GTACGCGCAC GCAGAATGAT TGAGCGCGCG
ATTAAACAAG AGCAGGCTTC TGCGAATTAA
 
Protein sequence
MSVQKYPLNT WYVACTPDEI TMAPFARKIC GIALVFFRNT HGTVVALEDF CPHRGAPLSL 
GKVENGQLVC GYHGLRMGDD GATKAMPNQR VQAFPCIQRY AVVERYGYIW IWPGDKSLAD
ESLLPKLEWP NNPNWGYGGG LYHIKCDYRL MIDNLMDLTH ETYVHASSIG QKEIDEAPVT
TKVDGESIVT SRFMDNVMAP PFWASALRAN DLADDIPVDR WQICRFNLPS HIMIEVGVAH
AGKGGYLAPK ECKASSIVVD FITPESDHSI WYFWGMARDF KPQDSELTNS IRSGQGAIFA
EDLDVLERQQ ENLLRHPDRT LLKLDIDAGG VRARRMIERA IKQEQASAN