| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0843 |
|---|
| Symbol | |
|---|
| ID | 4173984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 994210 |
|---|
| End bp | 995064 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638053846 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_660425 |
|---|
| Protein GI | 109897170 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.146434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA ATTTTAGAAA AATAATAAAA TCTGTTCCGG TTCTAATTCT TTTATCCGCC
AGTACGGCCT CTCATGCCGT TACGCCTGAT GTAGACGGAG AAGGCAATTG GTTAATCAAT
AACGCAGGCT ATACGTTTGA TGCGAGCGTA AGCGATGAAT TTAATCAAGC CGGACAATGG
CAAACCCCTG ATACTACAAA GTGGAATCGG TATCACCCTA CCGGTTGGCT TGGCAATAAC
AGTTTTACCT ATAGCAACTC ACTTGCATAT ACGCATCAAG GAAATCTTGT ACTGGAAGCA
AGGCAAGGTG ATTTCTTTGG CGATAAGCAC ACCACGGGTA TTGTCTCTAG TAAGCAAGCC
TTGAAGTACG GTTATTTTGA GGTGAGAGCC AAAGCTGCTA ATAATAATAT TGCGAGTAGC
TTTTGGTTTT TTAACCGCAA TAACGCTAAT GGCGAGCAGT ATGAAATAGA TGTGTACGAA
CATTTCCCCT ATGTAGGCTG GAATGACCAA ACCAAAAGTA AAAGTAATAT TCATCACTTT
GTATGGACTC AGCAAACAGG CAACGTAGAC CAAATTCCAA ACTACAGCTA TGCAGCCCAA
CTTGAAAACG GCGGTGTAAA CACGGATTGG CATACCTATG GTGTAATGCG AACGCCCGCT
GGCATTTACT TTTACGTAGA CGGTAAAAAA GTACGAACTA TTTGGAAGAG TGGCGTCAAT
GCGGCGGATT ATCCTGGAGA CGTAGATATG CCGGTTATTC TCGATATTTT AGTGTACGAC
TGGCAATCAG GGGATAACGA GCCGAGACAA GAACGCTCCT ATTACCATGT TGATTACTTT
AGAGCGTGGC GATAA
|
|---|
| Protein sequence | MKINFRKIIK SVPVLILLSA STASHAVTPD VDGEGNWLIN NAGYTFDASV SDEFNQAGQW
QTPDTTKWNR YHPTGWLGNN SFTYSNSLAY THQGNLVLEA RQGDFFGDKH TTGIVSSKQA
LKYGYFEVRA KAANNNIASS FWFFNRNNAN GEQYEIDVYE HFPYVGWNDQ TKSKSNIHHF
VWTQQTGNVD QIPNYSYAAQ LENGGVNTDW HTYGVMRTPA GIYFYVDGKK VRTIWKSGVN
AADYPGDVDM PVILDILVYD WQSGDNEPRQ ERSYYHVDYF RAWR
|
|---|
| |