| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0839 |
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| Symbol | |
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| ID | 4173980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 987484 |
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| End bp | 990435 |
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| Gene Length | 2952 bp |
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| Protein Length | 983 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053842 |
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| Product | Ig-like, group 2 |
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| Protein accession | YP_660421 |
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| Protein GI | 109897166 |
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| COG category | [N] Cell motility |
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| COG ID | [COG5492] Bacterial surface proteins containing Ig-like domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATGGT TTCAGCCTAG TAAGGCGTCA CTTGCGATAG CTTTTGGACT CGCTAGTGCA
GGGTATGTAC ATACATCATA TGGACAACCA GCAGTCGTGA GCGTTGATTT AAGTAAGCAA
TTATACGTAG GTGATACCAC AGCACTCGAT CGCAATAAAT TCTTCAATAT TCATTCAAGT
CCCGGTGAAC CCGGCGCCGC TGAACAAGAC ATGCTTTACA TTAAAAATGA GCTCAACGCT
CAGTATGGGC GGATCTTTTG GGGGCCAATG GCCCTTAATG GCAGTGCTGA TTATCCCGAT
ACTGAACAGG CGATGCTTGA CGGTGAACAA TCGATTATTA ATGCCAAGGC TGGGGCGTTC
TATGAATTCG GGACTAATCG TATGGTTGCG ACTGAACACC CTAGGAGCGT ATTGGCGCCG
GGCAACGATC CGGTGGAAGG CGCGCGCTGG GCTGCAGACT ACTTTGAGTA TTATTTTGAA
GATGAAAGGC GTCCACTATT TTATGAACCA ATGAATGAGC CCTTTGTCCA TGCATCAGAT
TTCGTTGATG GGCCATGGGA TCCCGTCGCT AACGAAGCAG TACAAAGACA CATGGCGTCT
TGGTTTGCTG AGATAGGTAA AACGTTTGAC CAGCGAGGTT TAAATACTAA CGTTATCGGG
TTTTCTTCAG CGTGGCCGTC TTTCGAGCTG TCAGATTTTT CCCATTGGCA GTCCCGTCAA
AAAATGTTTA TGGACCTTGC GGGCGACCAC ATGGATGGTT TTTCCTTTCA CTTGTACGAT
GGTGTCAATG TAGAGGGCCA AGACAATTTC CGTTCTGGCA GTAATGCAGA AGCCATCATT
GATATGATTG AAGCATACAG TCATATTAAA TGGGGAGAGG TGAAAGACCA TGCCGTGACT
GAGTACGGAG GGATCATTGA TGGCTACCCG CTTGAATACA GTGCTGCAAA AAGTGCGCAG
GAATTGCGTT CTTACAACCA TATTTTATTC TCGTTATTGG AAAGAGAAGA CAGAATACTG
ACATCGACAC CATTCATTAC GGGGATATCA AAGTGGTTTT ATGATGCGAA CAACTTCAAC
CCCTATTCAG CGACAGTGCT GCGCCCCGAT CCAAATAAAA TTATCTCAAA TAAGGTCAAC
GGATACTTGC CCACTGAGAA AGCCTACTTT TATAAGTTAT GGTCTGATGT GAAGGGCAAT
CGCGTGGCGG TAGATACGTT AGATCCCGAT CTCGCTGTGC AGGCATTCAA TTATGGCAGT
ACGCTGTATT TGGCGTTGAA TAACTATGAA GACAGCAGTA AAGACGTTGA TTTACGTTTT
ATTTACCAAG GGAACTCGGT ATCACAAGTG CGGGCGAAAC GCCTAGATGT GCCGTACGAT
CAAGCGGCGA ACTACACGGA TGAAATCCTA TCTTCAGCGC CTTCCAGCAT TACCATGCAA
GGACATGAAA CAGTCGTGTT GGAATATGAG TTCGCTCAGC CGATTTCACC GGATGGTATC
GTGCGAAAGA GTAGTTATTA TGCGCAAACT TATTTACAGC CCATTGTTGA AAACACTGAG
TTGGCATTTA CCTTCAATGA TATTGATGTA GGGCAAAGCT CCATGGGGTT TGCGGATGTA
TATCAGGGGG TGGAATTTGA CCAAGCAGTA GTAGACGCCA TTCAAACGAA CGAAATTAAT
CGTTTAACGT CGACCATGCG TAGTTTCGAT CGACAACTGA CGAACATAAT AAACAAACAC
TCCGATGCAT GGCGTGAAAG TGCCGACTTT GCGCGCCTAA TACAAAGAGC GGAGCGCTCG
GCGACGACAG CTAAAGCCCT GCAATATCAT TATGCTATGC ATGGGTATAA TGCCTCAGAG
CGCACGGCCA TACTTAAAAT GGGTGTGGGT CGCAAACACG ATAAATCTAA ACAACCAGTG
GTGTTAGTTA ACGGATACAG AGTTGAGGTG CCTAATGATT GGCGCGGTTA CGATCAAACC
TCACGTGAAG ACTTCTTCGG CGTGATTGAA ATCCCCGTGC CAGCTAAATT TTTGAAGGCG
AATACCAATA TTGAGTTAAT ATTTCCTGAC ACTCAAGGGC ATGTTAGTTC GTTGATTTTA
GAGGTTGATA CCCAAGAGCC ATTGCAAACT GTTGCGGTGA CAGGCCTTGA AATGCAAAAG
CCTTATGTCG CCATTAAGAA AGACCGCCCT TATCGTTTGT TTGCCAACGT CATGCCGCAA
ACGGCCACCA ATAAATACCT GCTTTGGCAG TCTAGTGATG AATCTATCGC TACTGTTGAG
GATGGCTTAG TCACGCCGAT AGCCCCAGGT TTCGTTGACA TTAGCGCAAT GAGTGAGGAT
GGCGAGTTTA GTGCTTCCAC AAGTGTTGAG GTAAAAGACG AACTGACGGT CAGAAACACC
ATCGTTATTA CTAACGATGT GTCATCAATG GAACCGACAA ATAGCATTAC CCTTGATATT
GATTACTCGA CGAGTATCGA TCGCGACGTT GCATTTGAGT TGATAGGCCC CCAAGGTAAT
TGGCTAGGTT TAAGTCGCGT TACCGTGCCA GCGGGAGAGG GCACAACTCA GATCACTCTT
AGCTTTGAAG AAACGCTTGC CCCCGGAACG GGCTATAAAA TAATAGCTGC CCTGCGTGAA
GTAGGCGGGG ACTGGAGAAC CAGTGTTGAT GGTCACACTA TCACTGGGGT TGAAATCGCC
TCTCCAGATG CCGCACCTGT TCCAGTTGAC AATTTGTTAG GGGCAAATGG TGACTTTGAG
CAAGGTACAT TGGGAGATTG GCAACGCGTG TTTGGTTCAA CTGGTGACGT CGACATCAGC
CAAGAAGCCG CTTACAACGG TAGCTATGGC ATTAAGTTCG ACACTGCAAA TGGAAGAGCG
GGTATTTCAC TTGGCGAAAA CGTCTTACCA ACAGCGCTAA TGAAAGCTAA CAAGAGACTA
TGGCGTCAAT AG
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| Protein sequence | MKWFQPSKAS LAIAFGLASA GYVHTSYGQP AVVSVDLSKQ LYVGDTTALD RNKFFNIHSS
PGEPGAAEQD MLYIKNELNA QYGRIFWGPM ALNGSADYPD TEQAMLDGEQ SIINAKAGAF
YEFGTNRMVA TEHPRSVLAP GNDPVEGARW AADYFEYYFE DERRPLFYEP MNEPFVHASD
FVDGPWDPVA NEAVQRHMAS WFAEIGKTFD QRGLNTNVIG FSSAWPSFEL SDFSHWQSRQ
KMFMDLAGDH MDGFSFHLYD GVNVEGQDNF RSGSNAEAII DMIEAYSHIK WGEVKDHAVT
EYGGIIDGYP LEYSAAKSAQ ELRSYNHILF SLLEREDRIL TSTPFITGIS KWFYDANNFN
PYSATVLRPD PNKIISNKVN GYLPTEKAYF YKLWSDVKGN RVAVDTLDPD LAVQAFNYGS
TLYLALNNYE DSSKDVDLRF IYQGNSVSQV RAKRLDVPYD QAANYTDEIL SSAPSSITMQ
GHETVVLEYE FAQPISPDGI VRKSSYYAQT YLQPIVENTE LAFTFNDIDV GQSSMGFADV
YQGVEFDQAV VDAIQTNEIN RLTSTMRSFD RQLTNIINKH SDAWRESADF ARLIQRAERS
ATTAKALQYH YAMHGYNASE RTAILKMGVG RKHDKSKQPV VLVNGYRVEV PNDWRGYDQT
SREDFFGVIE IPVPAKFLKA NTNIELIFPD TQGHVSSLIL EVDTQEPLQT VAVTGLEMQK
PYVAIKKDRP YRLFANVMPQ TATNKYLLWQ SSDESIATVE DGLVTPIAPG FVDISAMSED
GEFSASTSVE VKDELTVRNT IVITNDVSSM EPTNSITLDI DYSTSIDRDV AFELIGPQGN
WLGLSRVTVP AGEGTTQITL SFEETLAPGT GYKIIAALRE VGGDWRTSVD GHTITGVEIA
SPDAAPVPVD NLLGANGDFE QGTLGDWQRV FGSTGDVDIS QEAAYNGSYG IKFDTANGRA
GISLGENVLP TALMKANKRL WRQ
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