| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0832 |
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| Symbol | |
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| ID | 4173973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 976664 |
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| End bp | 979603 |
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| Gene Length | 2940 bp |
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| Protein Length | 979 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053835 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_660414 |
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| Protein GI | 109897159 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0225317 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTTGC GTCTCCTTTT TTTATGCCTA GTTTGTAGTT TCGCTTTAAA TGTAAATGGA
CAAATTAAAA CCGTTGAAAC GACTTCTGTT AGCTCGCGAG AGAATATAAA CATTGGTTGG
CGCTATCACA AAGGGGAGAC GGCGCGCCCA CCAAGCAGCA AGCAATGGTC TGCTGAAGAC
TGGCAAGAGG TCAACCTTCC GCACAGTTAT GCCCTGACTT CGATTAACTT AGATAACAGC
GACGATGATA AGTCACAGCA AACATTTCAT CGCGATATTA GCTTTTATGA GCGAGCGCTA
ACCATCAAAG GAAACCAAGG CAGTAAGGTC TATCTCGAAT TTGAAGGGGC ACATCAGAAA
ACCCGTTTGT GGGTTAATGG GCAATATGTG GGTGAACATG CGGTAGGCGC CTACACACCA
TTTCATTTTG ATATATCTGA ATTTGTTACC TTGGGTCAAA CAAATACTCT TACCCTTGAG
TTAGATAATC GACGTAATAA ACAGATTCCG CCTGATGGCC ATACGACTGA TTACGTGCTG
TTTGGTGGCC TTTACCGAGA TGTTTATTTA AATGTATTAG ACCCTCTGCA TTTTACTTTC
GATTGGGACT CAAGCACCTC AGGGATTTTT GTCACCACCC CGACAGTAAC AAAAAGGGAT
GCGACGGTCA CCGTACGAAG CGAGGTGGTC AATACAGGAG ATAGCCCGCG TAAGTTCTTT
GTGCAAACCT ATATTGTTGA CCATCAGGCA ATCATCATTC AAAGAAAGCG TACAGCACAT
ACCCTAGGTT CGGGGGCCAC GCATTTGGTA AAACACACCA GCGGCATCGA CCAAAACTTA
CGTCTTTGGT CACCAGACAG TCCCTACTTA TATAAGGTGA TCAGTCAGGT ACTTGATGAA
GAAGGAAGGG TACTGCACAG CAAAACGAAT CCTCTGGGGA TCCGCAAATT TGAGCTAGTG
CTAGATAAAG GTCTCGTGCT CAACGGTGAA CCCATTGACA TTATCGGAGC GAATCGTCAT
CAGCATTTCC CCTATATAGG GGATGCAGTG CCAAATAATC TGCATCGTTT GGACGCGTTA
AAATTCAAGC GCTCGGGTAT GAATTTAGTG CGCTTGGCCC ATTACCCCCA CGATAATGCA
TTTTTGCAAG CATGCGATGA GCTCGGATTA ATCGTGGTCG AAGAGCCTCC TACATGGATA
GGTATGGGAG ATAAACTGTG GATGGCACGA TTAGAAGAGG CCACACGTCG AATGATACGA
AATCACCGAA ATCACCCGTC AGTGTTAGGC TGGGGAGCGG GTATCAACCA CAGAGGTACA
ATCAAGCGCC TACATTATGC CGTTAAAGAA GAAGACCCTA CGCGCATCAG CATGAACAAT
GGCACCTTAT GGACAGGGGA GCAACACTCG GGTATTACAG ACTTATATGC AGTAATGGAT
TACCGTGGAG CGAAGCGCCA ATCGGACGAT CTACTCTTTG CCATGGAGCA CTCGGGCTCC
ACTGATAGTC TTTCGCTGCA AGAGATAGTA TCTCGTTACA AAGGGGACCC AAACCTAATC
GGGTTAGCCT CTTGGAGCGC CCATGACAGC CAATCTTTTA TAAAACGCGA TGAGCAATAT
CCAAATTTAT CTGTGTGGCA AGCGTCAAGC TCGGATGCAT TCCGTTTACC CAAACCGAAT
TACTATTGGT ATCAATCAGA GCTTACCTCT GAGCCTATGG TACATATTGC TGACACGCGT
GGTCAGTTTG ACGATCAGGT GCAGGTGTTC ACCAATGCCG CAGAAGTGGA GTTATTGCAT
AACGATCGCT CATTAGGTCG TTATCAAGCC AAGCGTACAG AGCAAAACAA GTATCTTAAT
TCACCTTCTA TTTTAATCCC GTTTAAGTGG CAAAGCGGCA CATTAACTGC CATTGCCTAC
CAAAACGACG GCGAACTCGT TGTGGCGAAG CACCAAAGAG CCAAGGGTAC TCAACCTGCC
AAACTAGATG TAGTGTTCGA TACCGCAGGG TTTGACATGA CAGCAGATGG CTCAAGTATC
ATTCTTGCCT ACGCAAAAAT CACCGACAAT CAGGGAGGCT TGATTGACAA GGATACCCCT
AAGGTTAGGT TTGAACTGCA AGGGGACGGC CAGATCATTG GTGATGAAAC CATTGGTGCT
AATCCTGTTG CTTGGCGTAA TGGCCACGCA CCCATAATGA TTCAAGTCGG CTCCACGGCC
AGCGTTTTAA CATTGAGCGC TTATGCCGAC GGTTTGCAAA CCGGCAGTGC TAGCGTGGCG
CTAAATGAAG TAAGCCAAAC ACACTCAAAG AACGATTCAA GCCGTGTACT TGACCCCTTA
GCGCTGTATG TCGACTTTGG TAATCAAGAA CAACACCCGC AAGAAAACTT TTACATCTGG
TCTCATCAAT CAGGTGATGA CTCTCGCGTC GTGACAGCCG CCAATGGGCA AAAGGTAACA
ATAGCGTTAT CGGGGTCAAC GGAGCCACTT ACGTGGGATA ACACATGGGG AGTGCCTGGT
GATCTGAGCT TTCTAATCGA AGATGGGGTA AATAACGCCA AGGGGCAACC CATTAAGCTG
CACTTTGGTC AGTTACCTCA AGGGCAATAT GTGCTGCAAA CTTGGCATCA CATGCTAAGC
GATGACGGTG ATGCCATTCG CCCCCTGAAT TTTAGCATGC CCAATAACAC TGATGCCCAA
AGCGTAGATG GTTATCGCCC CACATTTGGT AAGCGTATCG CTATTACAGA AGCTGGAGGC
GGAGAAAGAG GTGACGGTGG TTCAAATAAA GGGGCTGCAG GGTTCGCACG ACACACCTTT
ACGGTAAACG AGGGAGGTGA AGCAACGTTG CTCATGGCCG CTCCTGATGG CAATCAGCAA
ATACGTCTTA ACGGTTTTGG TCTTACTCAA TTAGTTCCAG GAGCTACCAA TGGGTATTAA
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| Protein sequence | MSLRLLFLCL VCSFALNVNG QIKTVETTSV SSRENINIGW RYHKGETARP PSSKQWSAED
WQEVNLPHSY ALTSINLDNS DDDKSQQTFH RDISFYERAL TIKGNQGSKV YLEFEGAHQK
TRLWVNGQYV GEHAVGAYTP FHFDISEFVT LGQTNTLTLE LDNRRNKQIP PDGHTTDYVL
FGGLYRDVYL NVLDPLHFTF DWDSSTSGIF VTTPTVTKRD ATVTVRSEVV NTGDSPRKFF
VQTYIVDHQA IIIQRKRTAH TLGSGATHLV KHTSGIDQNL RLWSPDSPYL YKVISQVLDE
EGRVLHSKTN PLGIRKFELV LDKGLVLNGE PIDIIGANRH QHFPYIGDAV PNNLHRLDAL
KFKRSGMNLV RLAHYPHDNA FLQACDELGL IVVEEPPTWI GMGDKLWMAR LEEATRRMIR
NHRNHPSVLG WGAGINHRGT IKRLHYAVKE EDPTRISMNN GTLWTGEQHS GITDLYAVMD
YRGAKRQSDD LLFAMEHSGS TDSLSLQEIV SRYKGDPNLI GLASWSAHDS QSFIKRDEQY
PNLSVWQASS SDAFRLPKPN YYWYQSELTS EPMVHIADTR GQFDDQVQVF TNAAEVELLH
NDRSLGRYQA KRTEQNKYLN SPSILIPFKW QSGTLTAIAY QNDGELVVAK HQRAKGTQPA
KLDVVFDTAG FDMTADGSSI ILAYAKITDN QGGLIDKDTP KVRFELQGDG QIIGDETIGA
NPVAWRNGHA PIMIQVGSTA SVLTLSAYAD GLQTGSASVA LNEVSQTHSK NDSSRVLDPL
ALYVDFGNQE QHPQENFYIW SHQSGDDSRV VTAANGQKVT IALSGSTEPL TWDNTWGVPG
DLSFLIEDGV NNAKGQPIKL HFGQLPQGQY VLQTWHHMLS DDGDAIRPLN FSMPNNTDAQ
SVDGYRPTFG KRIAITEAGG GERGDGGSNK GAAGFARHTF TVNEGGEATL LMAAPDGNQQ
IRLNGFGLTQ LVPGATNGY
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