| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0739 |
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| Symbol | |
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| ID | 4173090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 842517 |
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| End bp | 843632 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053741 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_660321 |
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| Protein GI | 109897066 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.580961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTTAC TCAAGCCCTT TCTACTGACC ACTATTCTTT TGACTATAGT GACCGCGTGC
TCAAAGCAAT CTGAGCAAAA ACCATCCGCA GCGCAAGCTC TGCCGGTTGA AACGAGTGCA
CCGATTAAAG CAGTCATCAC ACAGTGGGAT GAATACACGG GTCGCTTCGA AGCGACTCAG
CAAGTGGATA TTCGCGCACG GGTTAGCGGC TATTTGGACA AAGTAAACTT TAAAGATGGT
CAAATGGTCA AGAAAGGGGA CGTGCTTTTC GTTATCGACC AACGCCCATT TAAAATCGCC
TTACAAAGCG CAGAATCGCA GTTTGCGTTA GCAAAAAAAG AATTGGCTAG AGGCAAAGAC
TTGCGTAAGA AGAACTCGTT GTCCCAGGAA GAAGTAGACC GTCGTCAAAA CGAATACGAT
ATCGCGCTAG CCAATGTTGA AACGGCTAAG CTCGATTTGG AGTTCACAGA AGTTAAATCC
CCGATTGATG GTGTGGTCTC ACGTGATTTA ATTAACGAAG GCAACCTCGT TAATGGCAGC
GCAACGAGTG CATCTTTACT GACAAATGTT GTATCTATAG ACCCTATCCA TTTTTATTTC
GATGCGGGCG AGCGTGACCT GCTAAAATAC ATTCGCCTTA GCCAATCCAA CAAACGTGAA
AGCTCACGTA GTGCGTCCAA CCCTGTCAAA GTCCGCTTAC AAGATGAAGA AGACTTTGTT
CACTCGGGTG TTATGGACTT TGTCGATAAC CAAATCGACC AAAACACCGG CACTATCGTT
GGCCGCGCTA TATTAGATAA CCCGGGTGGA TTTATCGTGC CGGGCTTGTT TGGTCGTATT
CGTTTATTGT CTGAATTGAA CGTAGAAAAA ATCCTGATCC CTGATGCTGT TATCGGTACA
GACCAATCCC GTAAATTCGT TTTTGTGGTG AACGGTGAAG GCAAAGTCGA TCGTAAATTC
GTTACTTTGG GTAAATTACA CACTAAGGAA TTACGCGTCA TTGAATCTGG TTTAACCCAA
GATGACCATA TTATTTTGAA TAACTTGATG CGCGCCCGTC CCGGTACGCC AGTTCAGGCA
GAAAATGTTG ACCTTTCTAG CCAATACTCG CTGTAA
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| Protein sequence | MRLLKPFLLT TILLTIVTAC SKQSEQKPSA AQALPVETSA PIKAVITQWD EYTGRFEATQ
QVDIRARVSG YLDKVNFKDG QMVKKGDVLF VIDQRPFKIA LQSAESQFAL AKKELARGKD
LRKKNSLSQE EVDRRQNEYD IALANVETAK LDLEFTEVKS PIDGVVSRDL INEGNLVNGS
ATSASLLTNV VSIDPIHFYF DAGERDLLKY IRLSQSNKRE SSRSASNPVK VRLQDEEDFV
HSGVMDFVDN QIDQNTGTIV GRAILDNPGG FIVPGLFGRI RLLSELNVEK ILIPDAVIGT
DQSRKFVFVV NGEGKVDRKF VTLGKLHTKE LRVIESGLTQ DDHIILNNLM RARPGTPVQA
ENVDLSSQYS L
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