| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0644 |
|---|
| Symbol | |
|---|
| ID | 4172998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 744779 |
|---|
| End bp | 745447 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053647 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_660227 |
|---|
| Protein GI | 109896972 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.553024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATTT TACTGGTTGA AGATGATCGC TCTTTGAGCG ATGCCCTAAG TCAATCTCTT
CGCAGCGAAG GCTACGCTGT CAATGGTGCC TGCACAGCAG CTCAAGCGTT ATCAGCGTTG
GCTACAGGGG AGTTCACCAT AATGATCCTA GACTTAGGCT TACCAGACAT GGATGGCCTT
GAAGTGCTAC GCCAAGCCCA TCGCAACAAA CACAGCGTAC CTACGCTCAT TCTCACAGCC
AGAGACAGCA TGACAGATAA AATCACAGGC CTAGATTCTG GTGCCGATGA TTACCTTGCT
AAACCGTTTG ATATGCAGGA GCTACTGGCA CGTTTGCGAG TCATGGAACG ACGATTAGGT
ACCGCTACAA GTTCGCTCAT TAACATAGGC AATGTCGTGC TTGATTTGGC GACGCATCAA
GTCACAGCAG ACAACAATGA GAAAGAGCTC TCACGCCGAG AATTCATGCT ACTTAAGGCT
TTAATGGAAA ATGCCGGACG TATTCAATCT AAGAGCCAGC TTGAAACAAA ACTGTATGAG
TGGGGTGATG AGCTATCGAG CAATGCAATA GAAGTTCACA TACACAATTT GCGTAAAAAG
CTGCCTAAGG ATTTCATTAA AACCATTCGC GGCGTAGGTT ACAGCGTGAC AAACCGCGTG
AGCGCCTAA
|
|---|
| Protein sequence | MRILLVEDDR SLSDALSQSL RSEGYAVNGA CTAAQALSAL ATGEFTIMIL DLGLPDMDGL
EVLRQAHRNK HSVPTLILTA RDSMTDKITG LDSGADDYLA KPFDMQELLA RLRVMERRLG
TATSSLINIG NVVLDLATHQ VTADNNEKEL SRREFMLLKA LMENAGRIQS KSQLETKLYE
WGDELSSNAI EVHIHNLRKK LPKDFIKTIR GVGYSVTNRV SA
|
|---|
| |