Gene Patl_0628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0628 
Symbol 
ID4173650 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp727478 
End bp728119 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content45% 
IMG OID638053631 
ProductGntR family transcriptional regulator 
Protein accessionYP_660211 
Protein GI109896956 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.721906 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATAACG TAAAGACACA AAATCTATAT CAGCAGTTGA AGCAGGATAT TGTTTGCGGC 
AAGTTGCCTG AAAAAACCGC GCTTAAGCAG GTCAAGCTTG CTGAGCAATA TGGGGTGAGT 
CGTATTCCCA TACGTGATGC ACTGCAACGC TTGAAAAATG AAGGTTGGTT AGTGGCACAT 
GGCAAGTCCA GTGTGATGTT GCGACCGCTT AACGCCCACG ACGCAGAGGA TTTGTATCTA 
ATGCGTTTGC AGCTCGAACC GATGTTATTC GCCCACGCTC TCATGAATAT TAACTTCGAA 
ACGCTGGGTA AAGCGCGGGA TATATTGCAG CAACTACAAA TGACCTCCCC CGACGATATA 
TTGTTAAACG GAGAGTTAAA CTGGCAGTTC CATCGCTGTT TGTATTTACC TGCTAGTCGC 
CCTGTGCTGT TTGATACGGT GGCACAAATG CACTTGCTAT GTGCCAGATA CATTGGCTTT 
CAAGAAACCA CGCTGGATCA TTTTTCCCAT AGTCAACAAG AACACGAGTC GTTACTAAAT 
GCGATTAGTG AAAAACAGTA CGAAATGGCC GATACAATTC TTAAGGAGCA TATTCGTAGT 
GCCGGTGAAA AATTAGTCCA GTACTTATCT ACGAGGCCGT GA
 
Protein sequence
MHNVKTQNLY QQLKQDIVCG KLPEKTALKQ VKLAEQYGVS RIPIRDALQR LKNEGWLVAH 
GKSSVMLRPL NAHDAEDLYL MRLQLEPMLF AHALMNINFE TLGKARDILQ QLQMTSPDDI 
LLNGELNWQF HRCLYLPASR PVLFDTVAQM HLLCARYIGF QETTLDHFSH SQQEHESLLN 
AISEKQYEMA DTILKEHIRS AGEKLVQYLS TRP