| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0618 |
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| Symbol | |
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| ID | 4173640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 715336 |
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| End bp | 716499 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053621 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_660201 |
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| Protein GI | 109896946 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAAGT TGATGCACAC CCTTCGTTTA CAGCCTTATT GGATAGCGCT CGTTATTCTA
ATATTACTTA CGCTCTGGGT CGCATCCGGT ATGTTATTCG CAGAACAAAC CGACAATGCC
CAAGCACGCA AAGAAGCAAA ACACAGAGAC GCCGGACTTG TTAGTGTTCG TGCTGAGCGA
GTGCACGCCA AACCTATCAC CCGAGAAATT AACTTATACG GTCGCACTGA ACCTAATCGT
AGGGTAACGC TGCGCAGTGA AGTCAATGGT CTAGTAGTGA AAATCTATGT GACTGAAGGG
CAAAGCGTGA AAGAAGGTGA ACCTCTAATT GATATTGAAA CCAGCGATCT GCTTAACCGC
CTTAAATCAG CAAAGTCGAC GTTAGCGCAA CGCAAAATCG AGTTAGAAGG TGCAGAGTCA
CTTGGCCAAA AAGGCTATCA ATCCAAAGTA AACTTAGCGC AAGCGCAAGC AAACTTGGAA
ACAGCGGTGT CTGAGGTCAG TACGCTGGAA TTGGCGTTAT CCAAATCTAC GTTGCGAGCC
CCCTTTGACG GCATAGTCAA CGAACGTCAC GTAGAGCTTG GTGATTTACT CAAGGATGGC
GATGAAGTAG CCATGCTGGT GGATTTAGAC CCACTGATTA TCACAGCAGA TGTCACAGAA
AGTGATGTGC AAGCTCTGAC GTTGGGCCAG AAAGCCTCAG GCCGTATGAT TTCAAATGAC
ACCGTTACCG GCACTATCCG TTATATTTCA AGCGTGTCAG ACATGGGAAC CAATACGTTC
AATGTCGAGG TTGCCATTGA TAACCCTGAG ACTAAATACC TAGCAGGTAT GAGCACCGAG
TTATCTGTTC CCCTGAAACC CACTTTGGCG GTGCGTATTA CCCCTTCGGT AATGGCGTTA
GACGAAGCGG GTAATTTAGG TGTAAAAACC GTGGTAAATG AACATGTAAA GTTTATCCCC
ATTGATATTG TTAAAAGCGA TAGCCAAGGG GTGTGGCTAG GCGGCATGGG CGAGATCACC
GATGTTATCA CCCTAGGTCA TGGTTTTGTC CGAGACGGTG ACAAAGTCAA GGTTACTTAT
GTTGAGGGCG ATATGGGCCA TCAGCAAGCC GCTGTTGGCA CGTCAAATAA CACACAACCA
AACGCCGATC TGCAGGCTCA GTAA
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| Protein sequence | MSKLMHTLRL QPYWIALVIL ILLTLWVASG MLFAEQTDNA QARKEAKHRD AGLVSVRAER
VHAKPITREI NLYGRTEPNR RVTLRSEVNG LVVKIYVTEG QSVKEGEPLI DIETSDLLNR
LKSAKSTLAQ RKIELEGAES LGQKGYQSKV NLAQAQANLE TAVSEVSTLE LALSKSTLRA
PFDGIVNERH VELGDLLKDG DEVAMLVDLD PLIITADVTE SDVQALTLGQ KASGRMISND
TVTGTIRYIS SVSDMGTNTF NVEVAIDNPE TKYLAGMSTE LSVPLKPTLA VRITPSVMAL
DEAGNLGVKT VVNEHVKFIP IDIVKSDSQG VWLGGMGEIT DVITLGHGFV RDGDKVKVTY
VEGDMGHQQA AVGTSNNTQP NADLQAQ
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