Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0525 |
Symbol | |
ID | 4173509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 611290 |
End bp | 613011 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638053527 |
Product | Na+/solute symporter |
Protein accession | YP_660108 |
Protein GI | 109896853 |
COG category | [R] General function prediction only |
COG ID | [COG4147] Predicted symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATGTTC AAGTACTCAC ATTTTTAATC GTAGGAGCTT CTTTTGCTCT GTACATCGCT ATTGCGATTT GGGCTCGCGC TGGGTCAACA CAAGAATTCT ATGTAGCTGG TGGCGGTGTT CACCCTATAG CAAACGGCAT GGCAACAGCC GCTGATTGGA TGTCAGCAGC ATCGTTCATA TCAATGGCTG GGTTGATCTC ATTTATGGGC TACGACGGGG CTGTATATCT ACTCGGCTGG ACTGGCGGAT ACGTACTATT AGCCCTTTGC TTAGCGCCAT ATTTACGTAA GTTTGGGAAG TTTACGGTTC CGGATTTCAT CGGCGATCGT TACTACTCAC AAACCGCGCG TACAGTGGCT GTTGTATGTG CCATATTCGT TTGCTTCACA TATGTCGCAG GCCAGATGCG TGGGGTCGGT GTGGTGTTTA GCCGCTTCCT TGAAGTCGAC ATCGTTACGG GTGTTGTGAT TGGTATGGCG ATTGTGTTCT TCTATACTGT GCTAGGTGGC ATGAAAGGCA TTACTTACAC TCAAGTCGCG CAGTACTGCG TGCTTATTTT CGCTTACTTA GTACCCGCCG TATTTATCTC CATCATGGTC ACGGGGCACG TACTGCCGCA AACCGGCTTT GGTGCGAGTT TAGCCGATGG GTCGGGGGTG TATCTGCTGG AAAAACTAGA TGGTCTCTCG ACACAACTAG GATTCAACGA GTACACCTCC GGTACCAAGG GCACCTTCGA TGTATTTTGC ATCACGGCAG CACTCATGGT CGGTACTGCA GGTCTGCCCC ATGTAATAGT GCGCTTCTTC ACCGTACCTA AAGTACGTGA TGCGCGTAAG AGTGCTGGTT GGGCTTTACT GTTTATCGCT ATTTTATATA CCACAGCCCC TTCTATTGCC GCATTTGCGC GAGTTAATAT GATTGAGACC ATCAATGGTC CAACCGTCAG CGAGCAAGCG CCCACTGGTA CGCCATATAG CGAAGCTCCT AGCTGGATAA CTAATTGGGA AAAAACTGGG CTGATTAGCT GGGATGACAA AAACCAAGAC GGTAAAATGT TCTACTCAGG TGATGAGCGA AACGAGATGC AAGTAGATCG TGACATTATG GTGATGGCCA ACCCTGAAAT TGCCAATTTA CCGGCATGGG TTATTGCGTT GGTCGCTGCA GGTGGTATTG CTGCCGCATT ATCAACCTCC GCCGGGCTGT TATTGGTTAT CTCTACATCG GTCTCACACG ATTTGCTTAA ACGCAACCTA ATGCCCAACA TAACCGACAA AAAAGAGCTG TTTTATGCGC GCTTGGCTGC GGGCGTAGCG ATTGTTATTG CAGGATACTT TGGGGTCAAT CCCCCTGGAT TTGTCGCGCA GGTGGTCGCA TTCGCATTCG GCTTAGCAGC TTCGTCATTC TTCCCTGCCA TCATAATGGG AATATTTATG AAGCGTATGA ATGACAAAGG GGCGATTTCT GGCATGTTAG CGGGGATTGG CTTTACCGCA GCGTACATTA TTTACTTTAA GTTTGTTAAC CCTGCGGCGA ATGTGTCAGA GAACTGGTGG TTTGGCGTTT CACCTGAAGG AATAGGTGCA ATTGGTATGT TGGTGAACTT CGCCGTGGCG TTATTAGTAT TCAAAATGAC GGAGGAAGCA CCACAAGAGA TTCAACAGTT AGTAGAAGAT ATTCGCTATC CTAAAGGTGC TGGAGATGCA ACTGCACATT AA
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Protein sequence | MDVQVLTFLI VGASFALYIA IAIWARAGST QEFYVAGGGV HPIANGMATA ADWMSAASFI SMAGLISFMG YDGAVYLLGW TGGYVLLALC LAPYLRKFGK FTVPDFIGDR YYSQTARTVA VVCAIFVCFT YVAGQMRGVG VVFSRFLEVD IVTGVVIGMA IVFFYTVLGG MKGITYTQVA QYCVLIFAYL VPAVFISIMV TGHVLPQTGF GASLADGSGV YLLEKLDGLS TQLGFNEYTS GTKGTFDVFC ITAALMVGTA GLPHVIVRFF TVPKVRDARK SAGWALLFIA ILYTTAPSIA AFARVNMIET INGPTVSEQA PTGTPYSEAP SWITNWEKTG LISWDDKNQD GKMFYSGDER NEMQVDRDIM VMANPEIANL PAWVIALVAA GGIAAALSTS AGLLLVISTS VSHDLLKRNL MPNITDKKEL FYARLAAGVA IVIAGYFGVN PPGFVAQVVA FAFGLAASSF FPAIIMGIFM KRMNDKGAIS GMLAGIGFTA AYIIYFKFVN PAANVSENWW FGVSPEGIGA IGMLVNFAVA LLVFKMTEEA PQEIQQLVED IRYPKGAGDA TAH
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