| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0498 |
|---|
| Symbol | |
|---|
| ID | 4172725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 576022 |
|---|
| End bp | 576738 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638053500 |
|---|
| Product | lipolytic enzyme, G-D-S-L |
|---|
| Protein accession | YP_660081 |
|---|
| Protein GI | 109896826 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2755] Lysophospholipase L1 and related esterases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTATC ACCTTGCTTC TGTTTTTCTC GCTTTACTGT TCATCGTACA GGGGAAATAC
GTTAGGCGAG TAACGCCTAA ATTACCCGAG CCGGAGGGAT GTCGAGAAGG CACATTCGGC
AGTGGCCCCC CGTTGTCGCT ATTGATCATT GGCGACTCAG CCGCCGCTGG AGTCGGGGTT
GAATTACAGC GATACGCCTT GGCGGGCAAC ATGTTAAATA CTCTTGGGCA ACATTACCAA
GTTGCTTGGA AGCTCATGGC GAAAACGGGG AATACTTCCG CAGAATTACT GAAAAAAATC
CAACACATTG AATCTACTCA AGCGTATGAA ACGGTCGTTA TCTCTATTGG CGTGAACGAC
GTAACTGGGC TTACATCGTC TCGTAAATGG TTAAGCAATC TTGCTTTCAT CTCCCAAGCC
TTACAGGATA AATTCGGCGC AAAGCGCGTA CTTTTTTCAA GCCTGCCACC TATGCATTTA
TTTCCAGCTT TACCCCAGCC CTTGCGTTGG TGGTTGGGCG TTAGAGCCAA GCACTTAAAT
GATCTTGCAG AAAAATTCTG CCAAACCAAT CCCCAATGTC ATTTTGTCAG TGCCCCCTTC
CCCATCGATC AGCGCTTTAT CGCTGATGAT GGCTTTCATC CTGGTGCCCT TGCCTATCAA
TTGTGGGGCG AATACTTGGC ACGCGTATTA CAAGAAAAAC TCATTCGACA TGCATGA
|
|---|
| Protein sequence | MLYHLASVFL ALLFIVQGKY VRRVTPKLPE PEGCREGTFG SGPPLSLLII GDSAAAGVGV
ELQRYALAGN MLNTLGQHYQ VAWKLMAKTG NTSAELLKKI QHIESTQAYE TVVISIGVND
VTGLTSSRKW LSNLAFISQA LQDKFGAKRV LFSSLPPMHL FPALPQPLRW WLGVRAKHLN
DLAEKFCQTN PQCHFVSAPF PIDQRFIADD GFHPGALAYQ LWGEYLARVL QEKLIRHA
|
|---|
| |