Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0489 |
Symbol | |
ID | 4172716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 564933 |
End bp | 567278 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638053492 |
Product | penicillin-binding protein 1B |
Protein accession | YP_660073 |
Protein GI | 109896818 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.290067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA CCGCTAAAAA TAAGTCTAAA TCCAGCCAGT CAGGGGCATC ATCCAAGCTC AGGCATTTAC ACCCTTGGGC GTGGCTTAAG CGCAATTGGT GGCGCTTACT CATTATTTTG ACCGCCGTTG TAGCTGCATA CGGAGTGTAT TTAGACGCAC AAATTGTGAA GCAATTTAGT GGTAATAAAT GGCAGGTGCC TGCTCAAATT TTTGCGCGCC CGATGCATTT TGAGCTTAAA CAAGAGATAA CGACTCAAGA GATAGTTGAG GAACTAGAAC TACTTGGTTA TCGCAAAGTA CGCCACGCAG ACGATACCGG AGAATATCAA TTAAAGGCCT CAGGGGTACG TATTCAACGT CGTGCTTTTC ATTTTCCTCA TGGCAAAGAA TCTGAAGTCG CACTGGACAT AACACTGGCC AATGGCCGGG TTGCAAGCTT ACGCAATTTA GATAATAACC AAGCCTTAAA TGACGTTTAC TTGGAGCCTT GGCTTGTGAC TCGCCTAATG AGCAGTGGGC GAGAAGATCG CATGTTGGTC AATTTAGACG GCGTACCGCA GTCCCTTATC AAGGCGTTGG TGTTGGTTGA AGATAAAGAC TTTTACAAAC ATTATGGTAT TGCACCGCTT TCTATATTAC GCGCACTTAT TGCCAATGTA TCCGCAGGGC GAGCGGTTCA AGGCGGCAGC ACTTTGACCC AGCAATTGGT TAAAAATCTG TTTTTAACCA ATGAAAAGTC ACTGGTACGC AAAGCTAAAG AAGCATTAAT GGCGTTGATT ATCGACGCAC GTTACAGCAA AGATGAAATT ATCGAAGCGT ATCTCAATGA AGTTTTTCTC GGTCAAAATG GCAACACAGG TGTACATGGT TTTGGTTTAG CCAGCTTGTT TTATTTCGAC CGTCCGATTG CTGAATTAAA CGTAGCGGAA ATAGCGACCT TGGTTGGTAT CATAAAAGGG CCGTCTTATT ACAATCCAAG ACGTCATCCT GAGCGAGTCA TTGAGCGTAG AAATTTGGTA CTGCGTATCC TATTTGAAAA CAACGAACTG CAAAGAAACG AATACGAATA CGCTATTAAT CAACCTCTTA ATTTGGCAAC CGGGGCAAGT TTAACCTCTG GAAAGCACCC TGCCTTTATG AGCATGGTGC GCAGAGAATT AAAAACGGTT TTGTCGGACC CAAACATGCG AGAGTCTGGT CTGAAAGTCT TCACGACCTT GGACTCTGTG GCCCAGAGAA AAGCCGAACA AGCCCTAAAA GTGGGAGTGA AAGCCCAGCA AAAGCGTATG AAACTGACCG CTTTGCAAGC AGCTATGGTG GTAACGGATA TTAAAAGCGG TGAAGTACGC TCCATCGTCG GTGACGTTAA TCCGCAATTT CAAGGCTTTA ATCGGGCACT CGACGCCAAA AGAGCTATCG GTTCACTGAT AAAACCTGCC ATTTACTTGA CCGCATTAGA GCGTGCGGCG CAATATAATT TGGCGACTCC GTTAAAAGAC GAACCCATTA GCTTAAAAAG TACCTATGGA AAAATGTGGG AGCCGAAAAA CGCCGATAAA AAATTCCGCG GTCAAGTCAG TTTAGTGGAA GCGTTAACAC AATCCTTGAA TGTTCCAACG GTAAACTTGG GCATGGAAGT CGGGCTAGAC GATATTGCTG CCACCGTGGA GCGTTTAGGC GTGAACGAGC CGATGGATAT CTATCCAGCA ATGACGTTAG GGGCGGTGAA TTTATCTCCT ATTCAAGTCA ATCAGATGTA TCAAACCATC GCAAACAATG GGCGATTCAT TCCTTTGCAC GCGGTAACGG CCGTTTTATC TCCGAAGAAC AAGCCATTAT GGCGTTTTAG TGCAAGAGGG GAGCAGCGAG CAGATCATAA AGCCACTTAC TTATTAAACT ACGCACTACA CAAAGTGACG CGTGAAGGGA CGGCAAGACA GATAAAACAA ACCTTCGGCG ATATCAATAT GGCAGGTAAA ACCGGCACCA CAGATGATTA TCGTGACAGT TGGTTCAGCG GATTTGATAA TAATATTTTA GTAACCAGTT GGATGGGGAA AGACAACAAC GAACCTATTA ATTTGAGCGG TGCCAGTGGT GCTATGCAGT TATTTATTGG TTACCAGAAG CTGCAGCAAC CTAAGTCATT CGTCAGGCGC TATCCTAAAG GGTTGGGTAT TGCCCATTTT GAAGAGCAAA GCGGTGCGCT TAGCCGCCCA GGTTGTGCTA ATACCATTAG TGTTCCGGCG ATTTTGGACG CCCTTCCTCC TGTGCCAAAA ACCTGTAACG GGGAAGTACG AGGCCCACTC AAGAAATCAC TATGGGAAAG GCTGTTCGGT AACTAA
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Protein sequence | MKKTAKNKSK SSQSGASSKL RHLHPWAWLK RNWWRLLIIL TAVVAAYGVY LDAQIVKQFS GNKWQVPAQI FARPMHFELK QEITTQEIVE ELELLGYRKV RHADDTGEYQ LKASGVRIQR RAFHFPHGKE SEVALDITLA NGRVASLRNL DNNQALNDVY LEPWLVTRLM SSGREDRMLV NLDGVPQSLI KALVLVEDKD FYKHYGIAPL SILRALIANV SAGRAVQGGS TLTQQLVKNL FLTNEKSLVR KAKEALMALI IDARYSKDEI IEAYLNEVFL GQNGNTGVHG FGLASLFYFD RPIAELNVAE IATLVGIIKG PSYYNPRRHP ERVIERRNLV LRILFENNEL QRNEYEYAIN QPLNLATGAS LTSGKHPAFM SMVRRELKTV LSDPNMRESG LKVFTTLDSV AQRKAEQALK VGVKAQQKRM KLTALQAAMV VTDIKSGEVR SIVGDVNPQF QGFNRALDAK RAIGSLIKPA IYLTALERAA QYNLATPLKD EPISLKSTYG KMWEPKNADK KFRGQVSLVE ALTQSLNVPT VNLGMEVGLD DIAATVERLG VNEPMDIYPA MTLGAVNLSP IQVNQMYQTI ANNGRFIPLH AVTAVLSPKN KPLWRFSARG EQRADHKATY LLNYALHKVT REGTARQIKQ TFGDINMAGK TGTTDDYRDS WFSGFDNNIL VTSWMGKDNN EPINLSGASG AMQLFIGYQK LQQPKSFVRR YPKGLGIAHF EEQSGALSRP GCANTISVPA ILDALPPVPK TCNGEVRGPL KKSLWERLFG N
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