Gene Patl_0487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0487 
Symbol 
ID4172714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp561691 
End bp562221 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content43% 
IMG OID638053490 
Product2'-5' RNA ligase 
Protein accessionYP_660071 
Protein GI109896816 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGCTT TTTTCGCTCT TACCCCACCT GGCACCACTA AGTTAGCCAT AGAAACTTGG 
CGCGATAAAG CATTCCCGCA ATTTTATAGT CCAGTCAAAG CGAGTAATTT TCACATTACC 
TTGGCCTTTT TAGGTAATAT AAACGAATCG CAACTTGACT CTCTCAGTCA GTATATTGAT 
GCGCACTTAA ATACCCAATG CTTTTTACTC ACTTTGGATT ATGTTGGCTA TTGGTCGAAA 
CCCAAAGCGT TGTGGCTGGG TAACACTCAA GTTTCAAAAG AACAACTCGA TTTGGTGGCA 
TTACTACAAA AAGCGTCACC AGCGTGTGGC ATTACCATGC AAAAGCGCGA TTATATATCT 
CATTTAACAT TGGCTAGAAA ATGCAGTGAA AATCCACCGG CTGCGTTAAT AGAGCCTAAT 
TTTGCATTTC AAGCAACCGA ACTGACCTTA TATGAATCGG CTTCAAGTGC ACATGGCGTC 
ACCTACCGGC CAATACTAAC CTGGCCGTTT TCACCTCGTT TCTCCTTTTG A
 
Protein sequence
MRAFFALTPP GTTKLAIETW RDKAFPQFYS PVKASNFHIT LAFLGNINES QLDSLSQYID 
AHLNTQCFLL TLDYVGYWSK PKALWLGNTQ VSKEQLDLVA LLQKASPACG ITMQKRDYIS 
HLTLARKCSE NPPAALIEPN FAFQATELTL YESASSAHGV TYRPILTWPF SPRFSF