| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0467 |
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| Symbol | |
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| ID | 4171810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 545066 |
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| End bp | 547276 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053470 |
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| Product | putative GAF sensor protein |
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| Protein accession | YP_660051 |
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| Protein GI | 109896796 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.116791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACATC AATCGGCTTT ACAAGAACTT AAGCAACTAT TAGCTAATGC CCCTTCTTTA
ATCAGTGCTT ACGACAAATT AGAGCCATTG TTGCTATCAT TATTTAATGT TCAACGCATG
AGTATCTTTC AGCGCAGAAT GCAGCACCAA GATCTTGTTG CCCGCTTTAA AACAGGCAAT
GAAATACAAG AAATTAAAGT GCCCATTAGC CCGCAGTCGA TTGCGGGATA CGTAGCATTA
AGTCAAAAGC CACTGATTGT TAATGACCCC TATAGCAGTG AAGAGCTATC TGCGATACAT
CCACGGCTAA AATTCGCTGA TAAATTCGAT AAAAGCTCTA CCTTCAAAAC ACAGAACCTT
ATCTGCATAC CTATTTTAAA CGCAGGTGTG TTGATGGGTA TTATGCAAAT CATCAATAGA
AACGATGGTG TCTTTCAATC GGCCGACTTA GCGTTAGCCG ATAAAGTCGC ACAGGCTTTA
GGCAATAAGT TTCGCTATGA GCTTGGTGGA ACTAGCCAGC CGTTCGATTA TCTAGTCCAT
AGAAACGTAA TAGATGAAGA CACGTTGGCG AAGTATGTGC ACACTAATCC TGATCACGCC
CAACTCGTTC AACGATTGAT GACGGAAAAG CGCATACCAG AAGACGAGAT GGGTATCGCG
CTGTCAGTGC ATTACCAAGT CCCTTACATC GGTTATAAAC CGGACCGATT TCATCTATAT
CAAAGCGACA GCAAATTAAA TTTATCATAT CTGAAACGTA ACTTTGTTGC GGTGATCACC
GATGCCACTG AAAAACCCAC TGTGCTAATG GCGCAGCCCA GTAATGCCAA TTTACTGATG
GAAATTGAGA GTGCATTAGG CATTGATAGC TATGGGATCT CGGTCGCACT GCCTAACACC
GTTTTACAAT ACTTAGGTGA AGCAAGCGGT GGTGGCGCTG GTCCTGGCGC CATGAACGAG
ATCCTAGATG AAATAGAAAC CAGTGGTCAA GAAGCCGATG AGCAAGCTGA TGATATGTCT
GACGATGCAC CAGCTGTAGT GCGCCTGGTC AGCCGTATTT TGCACGATGC CAAGCGACTC
GATGCATCTG ATATTCATAT AGATGCAGAG AAAAATGCGC CAACAAGAGT TCGTATGCGC
ATTGACGGAG TGTGCCGCGA TATCACCCAA GTGCCTGCTT CGCACCACAA TGCCGTAATT
GCCCGCATCA AAATCATGTC TAATTTGAAC ATCGCCGAGA AGCGCCTACC TCAAGATGGC
AAGCTCGCCT TTAAATTATC AGGGCAAATT ATCGAAGTAC GCGTGGCGAC GATTCCCACT
GTGGCCGGGG AAGGTGTTGT TATGCGTATT CTTGCTACCG GCGGCGCACT GCCTATGGAG
AAAATGAATC TATCACCAGC CAATAACCAA AGCATATTAC GCATGATTGA AAAGCCCCAT
GGCATTTTGC TGGTCGTTGG CCCAACAGGC TCAGGTAAAA CCACCACTCT ACACGCTGTG
CTAGGCCACA TTAATACCCC TGATAAAAAA ATATGGACAG CTGAAGACCC CGTCGAAATC
ACACAAGCAG GCTTGCAGCA AGTCCAAGTA AGTCCTCGCA TCGGATTTAC CTTTGCCAGC
GCCCTACGCG CTTTTTTACG GGCAGACCCA GACATCATAT TAATTGGTGA AATGCGTGAC
AAAGAGACCG CCCATGCCGG CGTCGAAGCG TCGCTTACAG GGCATTTAGT GTTCTCTACT
TTGCACACCA ATTCCGCCCC TGAAACCATT ACTCGTCTGT TAGATTTGGG CATCGACCCC
GTTAACTTTT CTGATGCCTG CATCGGTATT TTGGCCCAGC GCTTAGTGCG TACCTTGTGC
AAAAACTGCA AAGAAGCGAC CCCAGCATCA GACACTGATG TAGAGTTTAT CACGCGCCAG
TACGGTGCGG ACTACGTATC CGAGCTTAGC CTCCAGCCGA CCTTGATGCT GCATAAACCC
AAAGGCTGCG ATAGATGTGG TAACACAGGC TATAAAGGTA GAACCGGAGT TCATGAATTA
CTCAGCATGA CACCCGCACT GCGCTCAATG GTATATAAGG AAGCACCTGT CAGCCAACTT
AAAGCGCAGG CCATGGAAGA TGGTATGCGC ACCTTGATTC AAGATGGCAT TTTAAAAGTG
CTAAAAGGGG ATACTGATAT TGCACAAATT CAAATGCTAG CAAGTGTATA A
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| Protein sequence | MEHQSALQEL KQLLANAPSL ISAYDKLEPL LLSLFNVQRM SIFQRRMQHQ DLVARFKTGN
EIQEIKVPIS PQSIAGYVAL SQKPLIVNDP YSSEELSAIH PRLKFADKFD KSSTFKTQNL
ICIPILNAGV LMGIMQIINR NDGVFQSADL ALADKVAQAL GNKFRYELGG TSQPFDYLVH
RNVIDEDTLA KYVHTNPDHA QLVQRLMTEK RIPEDEMGIA LSVHYQVPYI GYKPDRFHLY
QSDSKLNLSY LKRNFVAVIT DATEKPTVLM AQPSNANLLM EIESALGIDS YGISVALPNT
VLQYLGEASG GGAGPGAMNE ILDEIETSGQ EADEQADDMS DDAPAVVRLV SRILHDAKRL
DASDIHIDAE KNAPTRVRMR IDGVCRDITQ VPASHHNAVI ARIKIMSNLN IAEKRLPQDG
KLAFKLSGQI IEVRVATIPT VAGEGVVMRI LATGGALPME KMNLSPANNQ SILRMIEKPH
GILLVVGPTG SGKTTTLHAV LGHINTPDKK IWTAEDPVEI TQAGLQQVQV SPRIGFTFAS
ALRAFLRADP DIILIGEMRD KETAHAGVEA SLTGHLVFST LHTNSAPETI TRLLDLGIDP
VNFSDACIGI LAQRLVRTLC KNCKEATPAS DTDVEFITRQ YGADYVSELS LQPTLMLHKP
KGCDRCGNTG YKGRTGVHEL LSMTPALRSM VYKEAPVSQL KAQAMEDGMR TLIQDGILKV
LKGDTDIAQI QMLASV
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