Gene Patl_0423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0423 
Symbol 
ID4173812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp499547 
End bp501946 
Gene Length2400 bp 
Protein Length799 aa 
Translation table11 
GC content43% 
IMG OID638053426 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_660007 
Protein GI109896752 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.721204 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATAAAC CGTTTGATGT GACACTGGAT AATTGTCATA AAGAGCCCAT CCATATCCCA 
GGTTCGATTC AACCTCATGG CTATCTATTA CTGTTTGAGC CAGAAACACT GATATTACAG
TATTGCAGTG AAAACGTGGC GGACTTAATG CAATGCTCGC TAGACGCGTT ACTTGGGCAG
TCATTGGATT CAATATTTGA CCGCGAATTC GCCACAAAGG TAAAGGCGCT CGATTTCGAT
AAAGGCTTTC ACGAGGTTAA CCCACAGCAA ACGACACCGA TTGCCGCGCT CGCTCAAGCG
CTGAACTCTA ATACCACGGG GCCGGTGACT GACGCGCAAG CCGAGAGTAT CAAAACACAA
TCAACTTACA ATGCCATACT GAGCTTACAC GACGACCTAT TGGCCATTGA ATTAGAGCCC
GCGTTATCTG CTAGTTCAAG TTCGTTTAAT CCCGTTAAAA ATTTAATTAA TCTATCGCTT
AATGACTTGG CCCAAAGCCA AGACTTAAAT AACGTTTTTG CTTATTCAGT TAACGAAATT
CGCAAAGTTA CTGGGTTTGA TCGCGTCATG TTGTATAAGT TTGATGCGGA CTATAACGGT
GAAGTTGTTG CTGAGGCTAA AAAGCCTGAG TTGAACTCCT TTTTAAAACA GCACTTTCCT
GAGTCAGATA TACCAAAGCA GGCGAGGGAG CTGTACGTTA AAAACCCCAT TAGACTGCTT
GCTGATGTTA ACGCCAAGCA GTCTATGTTG TACCCAAATG ATCGGCCTGT TGACTTGAGT
AAGGTGACGC TGCGCAGTGT GTCACCTATT CATTGTCAGT ATTTACGTAA CATGGGGGTG
AATGCCTCTA TGTCGATCAG CATAGTGGTG TCGGGCAAGT TGTGGGGGCT AATTGCATGT
CATCACTATC GCTCTCATGT AGTGCCGTTT GAAACGCGTG AAGTGGCTTT ATACATGGGG
TTGATGTTGT CTTATTTGAT TTCATTAAAA GTACAAGCTG ATGCTGAGCA CCGTGATTCG
GCGGTGTTAT CGTTAAATGC GTCGATCACC GCAAAAATGG CTGAGCGTAT TTTCTTTACA
GATGGTTTGC GTGAAGAAAC AGACAATCTG ATGCGTATGA TGAACGCATC AGGCGTGGCC
TGGCGACTAG AAGAAGACAT AGAATGCTTT GGCAAAACCC CCAGCCCTGA TCGCATAGAA
GCGCTTTTTA ACTGGGCGAC ATCAACCAAG TTAGTCACAG ATACGATTTA CCATACAAAG
ACCTTAGGTA AAGATAACCC TGACTTTATG GATATCAGTG ACGTTGCCAG TGGCGTATTC
ATCTTGTCTG TCTCCTCTGT TAGTAACTTA TTCTTGATAT GGTTTAGGCA AGAGGTTGAA
CAAACCAAAG ATTGGGGAGG GAAACCTGAA AAAACGATCG AGTTTTTAGA TGATGGCAGC
CATAGGCTGA TGCCGCGAAG TTCTTTTCGT TTATGGCGTG AAAATGTCAA AAACCAATCG
TTAGCCTGGG AAGCGGTAGA GTTATCCAGC GCTTTGAAAT TCCGAGACAC GATAGTGAAC
TATGTGTTGT CAAAATCGGA GCGTCTTGAG TTACTAAACG AAGCGTTAGA GCACAAAGTA
GCTGTGCGTA CCGACGAACT AAAAAAAGAA ATTGCTAATA AAGAAAAAAT GCAAGATGAG
TTAGTGGAAG CCTTAGCCGC CTCTGAAGAA TCTAACCGTG AGCTAGAGCG TTTTGCATTT
GTTGCCTCAC ACGACCTTCA AGAGCCGCTT CGTAAAATTC AGTCGTTTGG TGGGCGTATT
CAGCAAACAG AGGCCACGTT AAGCGATAGA GGCCATGATT ATCTAACCAA GATGATGAAC
TCAGCAGAAA GAATGCAGGC GCTGATTAAA GGCGTGCTGA GCTTTTCACG TATCCACAGA
TCTAATGACG AGTTTGTTCC TTTGAATTTT GATGACATTA TTGAAGATGT GATCATGGAT
TTAGAAGTGT TGGTGACAGA GCAAAAGGCA GCTTTCTCAA TCGATCATAT TGGCACAGTG
TACGGAGATA AAAACCAGCT TCGCCGTGTG GCGCAAAATA TCATTCAGAA CGCCCTAAAA
TTCACTAAAG AGGACGTCCC TCCGCACATT GTTATTGCCC TTAACGATAA AGACGAAGAC
TTTGTCACCA TTGAATTTAA AGACAATGGC GTTGGATTTG CAAAAACGCA TGAGCAAAAA
ATATTTGGTT TGTTTGAGCG TTTACACTCA AAAGCTGAGT ATTCAGGGAC TGGTCTAGGC
TTAGCGATAT GCAAAAAAAT TATTAATCGA CATCAGGGGA AAATTTGGGC TGAGTCTCAA
TTTGGTCAAG GCGCGTCATT TTTTATTACG TTGCCAATAA GATCAGAAGC AGTAGAATAA
 
Protein sequence
MNKPFDVTLD NCHKEPIHIP GSIQPHGYLL LFEPETLILQ YCSENVADLM QCSLDALLGQ 
SLDSIFDREF ATKVKALDFD KGFHEVNPQQ TTPIAALAQA LNSNTTGPVT DAQAESIKTQ
STYNAILSLH DDLLAIELEP ALSASSSSFN PVKNLINLSL NDLAQSQDLN NVFAYSVNEI
RKVTGFDRVM LYKFDADYNG EVVAEAKKPE LNSFLKQHFP ESDIPKQARE LYVKNPIRLL
ADVNAKQSML YPNDRPVDLS KVTLRSVSPI HCQYLRNMGV NASMSISIVV SGKLWGLIAC
HHYRSHVVPF ETREVALYMG LMLSYLISLK VQADAEHRDS AVLSLNASIT AKMAERIFFT
DGLREETDNL MRMMNASGVA WRLEEDIECF GKTPSPDRIE ALFNWATSTK LVTDTIYHTK
TLGKDNPDFM DISDVASGVF ILSVSSVSNL FLIWFRQEVE QTKDWGGKPE KTIEFLDDGS
HRLMPRSSFR LWRENVKNQS LAWEAVELSS ALKFRDTIVN YVLSKSERLE LLNEALEHKV
AVRTDELKKE IANKEKMQDE LVEALAASEE SNRELERFAF VASHDLQEPL RKIQSFGGRI
QQTEATLSDR GHDYLTKMMN SAERMQALIK GVLSFSRIHR SNDEFVPLNF DDIIEDVIMD
LEVLVTEQKA AFSIDHIGTV YGDKNQLRRV AQNIIQNALK FTKEDVPPHI VIALNDKDED
FVTIEFKDNG VGFAKTHEQK IFGLFERLHS KAEYSGTGLG LAICKKIINR HQGKIWAESQ
FGQGASFFIT LPIRSEAVE