| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0404 |
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| Symbol | |
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| ID | 4173083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 476655 |
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| End bp | 477818 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053407 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_659988 |
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| Protein GI | 109896733 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0540732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAATA GATGGATGAA GGTTCTACTC CCCTTTCTAG CACTTATCGC CGGCTTTGGT
GGAATGACGT TGATAGAAGT CAGCGCTTCC GAAGACGAGA AGAAAGAGCT TGTCGATACA
CGCCCTACGA TTACAGTAGA AACTGCCCAT GCAGAAGATT ATCAAGTTGT CATTTCCAAC
CACGGTGAAG TGCAGCCTCT AGAGCGTACT ATGATTTCTG CCCAAGTGTC AGGCGAAGTG
ATTAGCTGGC ACCCCAGCTT TGTCGCCGGT GGGTTAGTTT TGCGTGGCAG TGTTTTGTTT
AGCATCGAAA AAGATGCCTA CGAAGCAGCG CTTTTACAAG CACAGGCCAA TGTCAGTTTG
GCCCAATCCC AATTAATAGA AGAAAAAGCC CGTGCTGACG TTGCCGAGCA AGAAGCCAGA
AGTCTTCCAA GCAGTAAAGT GTCTGATTTG TATTTACGTA AACCTCAATT GCTCAGCGCT
CAGGCAAATT TGAAATCAGC ACAAGCCAGC CTAAAAATTG CTCAACGCGA TTTAGATAAC
TGTGAAGTTA TTGCCCCCTA CGATGCACTC GTGATCAGCC GTAATATCGG TGTTGGCCAA
TTTATCTCTC AAGGTACCTC TGTAGGCGAA ATATATAATG TTGAAGCGGC TGAGGTCATC
TTCCCAATCG CTGGTTTTGA CCGCGAATTT TTACCCGACG ACCTAGCAGA AAAAGAAGCC
AAAGTTGTGA CCAACGGTTA CAGTCCAATT GAGCGTACCG GATTAATTTC ACGTGATTTA
GGCGTAGTGG ATCAAGCAAC CCGCATGAGT CAATTAGTGG TTCGGGTAAA CGATCCATAC
AGCCTGAAAA GCAATTTGCC AGCCCTCAAA TTTGGTAACT ATGTTCAGGT TAGTTTTCCT
GGACGTACCC TAGAGCACAT TTATCGCTTA CCTCAGGCGC TGGTTAATAA CCAGACGGTG
TGGATAATGG ACAAAGACAG CAAGCTACAA CCTAAGAAAG TCGAAATTCT TCGCGAGGAA
GGCGAGTACT TGCTTATCAG TAAAGGCATT TCTGACAACG ACAATATTGT AACGACCCTG
CCTGAATACC CGCAAACAGG CATGGAAGTC AAAGTCAGTA GTGGAAAATC AGCCAGTGAG
CTAACCGCTC AGAAAGCGAA ATAG
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| Protein sequence | MNNRWMKVLL PFLALIAGFG GMTLIEVSAS EDEKKELVDT RPTITVETAH AEDYQVVISN
HGEVQPLERT MISAQVSGEV ISWHPSFVAG GLVLRGSVLF SIEKDAYEAA LLQAQANVSL
AQSQLIEEKA RADVAEQEAR SLPSSKVSDL YLRKPQLLSA QANLKSAQAS LKIAQRDLDN
CEVIAPYDAL VISRNIGVGQ FISQGTSVGE IYNVEAAEVI FPIAGFDREF LPDDLAEKEA
KVVTNGYSPI ERTGLISRDL GVVDQATRMS QLVVRVNDPY SLKSNLPALK FGNYVQVSFP
GRTLEHIYRL PQALVNNQTV WIMDKDSKLQ PKKVEILREE GEYLLISKGI SDNDNIVTTL
PEYPQTGMEV KVSSGKSASE LTAQKAK
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