| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0396 |
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| Symbol | |
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| ID | 4173070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 452281 |
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| End bp | 454680 |
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| Gene Length | 2400 bp |
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| Protein Length | 799 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053394 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_659980 |
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| Protein GI | 109896725 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGATTT TACCGCACAG CTTGTTTGTT AGCGCGAGCT TAGCGATGGC ATTCACTGTG
AGCGCCCAAG AACAGAGTCG CCCTGCTCAA GTTGGTACTG AGGCAAATAC CAGTAATGAA
CAAGATAATA ACCTTGAACA CGTCACTGTC ACTGGCTCTG CCCAACCTAC TTTAATCATG
TCACCTAAAA ATGCAGTGAT CGACGGCCCG TTCGGTAAAG ACAAAAACTT AACGGAAATA
GCCCGCACCT TAACGTCTAT TTCCAGCGAC ATGTTAGAAC AGCTATCTAT TGATGACTTA
CAAGACGTAC TCACCTTAGT GCCCAACACG TATTCAGCCA GTGGCTTTGG TGCGCCTAGT
CTACCAACCA TCCGCGGCCA ATTAGGCGAA TTATTTCAAC AGGGTATGCG TCGTCAAGCA
GGCAACAATG GTTTTGGGAT CCCGTTGTCG TTTAACAGCG TTGGGCAAAT TGATGTAGTG
AAAGGCGCGC CTTCGGTCAT ACTTGGCACC ACCCAGCGTA ATGGGGGCTT TGTTAATTTA
AATAACAAGA CCGCAACCCT GTCAGGAACA GATTTAAAGC TGCAAGCTAG CGCAGGTAGT
TGGGAGCACT ATCGTGGTCA AGTTGACGTA AATACCACAA TCGAAGAAGG TAGAAGCGGT
ATTAGGGTCA GTGCTGAATA CATTGACAAC AACAGTTACT ACGACTTTAC CGAATTTCAA
AGCGAGGATT TATTCATTGC CTATAAAATT CTGCCAGATG ATAAATCTAG CTGGGATATT
AGCTTTGAAT ACTACGATGT GGAGTTTACA GATAACGCTG GCATTAACCG CCCTACACAG
AATCTAATCG ACAACAGTTT ATATATTACT GGTCAAGGCG TGCAGCCAAA TGGCTCACAA
GTGCCGGGCG CTTTTGCCGT GGTGTCCCCT ACCGGCGAAG TGCGTATTCC TCGCAGCACA
GTGCTTACCG ACCCAGACAA CATAAATAAT GCACAGACTT ACGTATTTCA TAGTACCTAC
GAGCGTCAGC TAAATGCTGT GCATACTCTG ACTAACCGCA GTTACTTTCA ATATTTAGAT
CGTGAAGAAA TCGCACAAAA CAGCTTTGTT GAAATCATCG ATGGGGCGAA AACCGCGCAA
AATCGGCTTG AGCTGACTTC AGCTTGGTCT GGCGATCAGC AAACCACCTG GGGAATAGAC
CTAAGGTACA ACGACGTACT CGGCTATAGT CAGTTTACGA CAGAAGCTGA CTTACCTATC
GATTTGCTTG GCAGCATAGA GCAAAGACGT ATTCCTCTGA CTGAAGCCCA ACAGGCGCGC
TTAGTCGAAC TTCGCCCTGG GGTTTTCGTG TCACCGGGCG CTAACTACGA CATCGATGGC
GATGGTAACA ACGACTTTTC ATTGTCCGAC ACCACAGATT CAACCACGTG GCAAACGGGT
TTATTTGCCG AACAAGACAG TGACTGGACC AGCCGATTTA GCACCACTGT TGGCTTACGT
GCTGACCACT ATGACGTGAC CGCACGGGAT GCGTTACCAC CACAAGGTCA GGTGGCGGCA
GAAGACAGCT TCAGCAAATG GTTATACTCC GGCTCAGCCA GCGCCCGCTT TAAAATCAAT
AACGATATCG TGACCTATGC TACGTATAGC TACAGTGAAG CGACCTCTAA CAGCATGGGC
GGCGGAACAG TATTAGGCGC TGAGAATAAA ATAAACCCTC TGAATTTTGC CACTGAAAAC
GAGTTATACG AATTGGGTGT GAAGTTCTCA CCTGTAGGCT CTCCTTGGTA CGCCGATGCA
TCTGTATTTG AGCAATCCCG TAGCTTGCGT AATCGCGATG GCAGTAACAC GGGCATTATC
GCCAAAGGCT TTGAAGCGCA AGTTTTTTAT CAAGGCAGTA GTTTGTGGGC CAATCTTGGT
TACAGCTACT TAGATGCCCG TTACGACGAC TCAGCCAGCG CACAAGACTC ACAACAAGTG
GCTGACGCAT TTGATAATTC GCGCCCCGAC ATTATTCAAG GCACAGGTAT CGGTGCGCCT
AATTTTGCTG GCTTTGCGCC CTCAAATGAG CGCGTGCAAG GTATACCACA ACAAACGGTT
TCAGCCAGTG CTGGCTATCA AATATGGGAT AACTGGGATG TATCTGGCTC GGCCATTTAC
AGTAAAAGTT ACCCTCTAGA TTACCTTGCC ACTGTGTTAA TCCGTGATCA AATTACCATT
AATATTAATA CCAATGTTGC CCTAACCGAT CAGTCAAGCT TGCGCCTTGA AATACGCAAC
CTGACCGATG AAAACAACTG GCGCCCCGTA TTTGAGGGCG GTTATTTTGG CTCAACCTTG
GTTTTCCCTG AACTACCACG CAATGTTCAG TTAACTTACA CCTACAACTT TAAGGCCTAG
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| Protein sequence | MSILPHSLFV SASLAMAFTV SAQEQSRPAQ VGTEANTSNE QDNNLEHVTV TGSAQPTLIM
SPKNAVIDGP FGKDKNLTEI ARTLTSISSD MLEQLSIDDL QDVLTLVPNT YSASGFGAPS
LPTIRGQLGE LFQQGMRRQA GNNGFGIPLS FNSVGQIDVV KGAPSVILGT TQRNGGFVNL
NNKTATLSGT DLKLQASAGS WEHYRGQVDV NTTIEEGRSG IRVSAEYIDN NSYYDFTEFQ
SEDLFIAYKI LPDDKSSWDI SFEYYDVEFT DNAGINRPTQ NLIDNSLYIT GQGVQPNGSQ
VPGAFAVVSP TGEVRIPRST VLTDPDNINN AQTYVFHSTY ERQLNAVHTL TNRSYFQYLD
REEIAQNSFV EIIDGAKTAQ NRLELTSAWS GDQQTTWGID LRYNDVLGYS QFTTEADLPI
DLLGSIEQRR IPLTEAQQAR LVELRPGVFV SPGANYDIDG DGNNDFSLSD TTDSTTWQTG
LFAEQDSDWT SRFSTTVGLR ADHYDVTARD ALPPQGQVAA EDSFSKWLYS GSASARFKIN
NDIVTYATYS YSEATSNSMG GGTVLGAENK INPLNFATEN ELYELGVKFS PVGSPWYADA
SVFEQSRSLR NRDGSNTGII AKGFEAQVFY QGSSLWANLG YSYLDARYDD SASAQDSQQV
ADAFDNSRPD IIQGTGIGAP NFAGFAPSNE RVQGIPQQTV SASAGYQIWD NWDVSGSAIY
SKSYPLDYLA TVLIRDQITI NINTNVALTD QSSLRLEIRN LTDENNWRPV FEGGYFGSTL
VFPELPRNVQ LTYTYNFKA
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