Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0377 |
Symbol | |
ID | 4173467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 429709 |
End bp | 432060 |
Gene Length | 2352 bp |
Protein Length | 783 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053375 |
Product | TonB-dependent receptor |
Protein accession | YP_659961 |
Protein GI | 109896706 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAGCCC AATTTAAATT ATTATTGTTA GCTACATCTA TAGCCAGCGT TTTTAATCCT TTATCCCTTA ATGCGCAAGA AAAAAGCACG GATACTAAAC AAGAAATAAC TGAAACAGAA GAGTCACAAG GCATTGAAGT GATAATGGTT TCTGCGACTA AGCGGTCTGA GAGCGTGCAA GATATTCCAC TTTCAGTCAC CGCTTTTTCG CAGCAACAAC TTGATATCAA AGGTGCTTCA TCGCTTACGG GCATTCAAGA GTCTACACCC AATCTAAATT TCTCGGTGCA ATCAGCTGGG CAAAACGTGG CGCGCGTTAC ATTGCGTGGT GTCGGTACTG AAACCTTAGT CGGTGGCGGA GACCCCGGCG TTGCGCTGCA CATTGACGGC ATTTACGTTG GGCGAAATTC AGCGGCTGCC GCTGACGTAT TTGATGTAGA CAGACTAGAA GTGTTGCGCG GTCCGCAGGG CACTCTATAT GGACGAAATG CCACGGGTGG CTCTGTCAAT ATCATTACTA AAAAGCCAAC TGACGAGCTT GAAGGCTCAG CTGATTTAAC CTACGGCAAC TACAACGAAG CGCGCGTACG CGGCGTAATC AATGTGCCCT TGAGTGACAA CCTGTATTCG CGCATAACTA TGCTGTCAGA GAGTCACGAT GGTTATATTA AAAATTTATA TGAAGGCGGC CGAGATGTGG ACGATAAAGA CAGCCAGAGC GGTCGCGCAC AGCTACTTTA TTTAGCCGAC TCTGGGGATG AATATTTACT TAGAGGCTAC TACTCAAAAA CTGGAGGCGC AGGCCCAGGT TCGCAATATT TAGGCACGGA TATAAACACA GAAAACGGCT ATCCCTCGGC GTATCTAATT GGGGTGTCTA GTGCAGGAGT CGGTGGTGCT GTATTAGCGG ACGCATTTGG ATTGGCGACC ACGGCGACAG GAGACTCAGT TTTACCATTA CCTACAGATC TTCACGAAGT CAGAAAAGAT GCTCCTGAGT TTACTGATAC CTTAATTCAG GGGATTGATT TTGATGCTAG CATCAATCTT TCCGACACCT TATTGCTTAA ATCTATTACC TCTTATCAAA CCAATGATAA TCAGATATTA GTAGATGCGG ACAGCTCAGA GTTACCCCTT GAAACTCGTA ACCGTAACAA CATGGCTAAA CAATACAGCC AAGAATTCAA TTTAATTTCT CAAACTCTTG GCCCTTTTCA ATGGATATTA GGTGCCTACT ATTACCATGA AGAATTAACC GAGCGCTTTG AAGTCATTAC CCCTTCTGGG CTAGTGCCTA TCGATACACA ATTAGGCGAA GGGGCTGTCG CTGGAGGGGG CGGCATAACA CAGTTACGTA TTGCCAGCCA TGAGGTTGAT TCAACAGCGT TATTTGCTCA GCTTTCTTAT GAGTTAAATG ATGAGTGGTC GGTAACAGGC GGGCTACGCT ACACCCGCGA CGAAAAAACA CAATCCAGGG AAATAGGCGG CCAGGTCGAT ATTACTAACA ATGTTCAGTT TTTGAGCGGT GATATCGGGC CATTAGGGCC TGACAGCGGG ACCACTTCTT TTACCGAACC GACGTATCGT ATCAGTACTG ATTATGAACT GAGCCCAGAC AATTTGTTAT TTGCTAGCTA TGCCCATGGT TATAAATCGG GAGGTTATGA TCTCAACGGT GGTGAGGTTA CAGATGAAGG TGAGCAAGTG CCTTACGAGC CTGAGTTTGT TAACGCGATT GAAATAGGCT CGAAGAACAA GTTCTTCAAT AACAAGATGA TACTCAACTT AACGGCTTTT CGTTATGACT ATGAAGACTT ACAGGTGTTT CGACTGTTAG CAACCGGGCC GGTTACCGAT AACGCAGCCC AGTCAACGAT CCAAGGTGTT GAGCTGGAGC TCAAAATTGA GCCCACAGAT AATGTTAAGT TTGATGGCTC AGTAGGCTAT TTGGATGCCA CATACGATGA GTATTCTATT GATATCCCGC CAACTGACTT TTCCGGTAAT CGCTTGAACT ACGCCCCTGA ATGGACCGGC CACATGGGCG CAGAATATGT AAAAACCATA GGTGAGGGCG ACCTAATTAC TCGAGTTGAT TGGTCATACC GTTCAGACAC TTACTTCGAC CGTGCAAACA CGGACCTAGA CATGCAAGAA GCTTATAGCT TGTTCAACGC GCGCGTACGT TATGACACCG AGAAATACTA CATCGATCTG TGGGCTAAAA ACCTAACCAA CGAAGACTAC GTGACGGGTC AGGTGATCAA CCCGCCATTT ACCTGTGGTT GTCGTACGGT GAACGTGGGG GCGCCTAGAA CGTATGGGGT CACAGTCGGC GCGCGTTTCT AG
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Protein sequence | MKAQFKLLLL ATSIASVFNP LSLNAQEKST DTKQEITETE ESQGIEVIMV SATKRSESVQ DIPLSVTAFS QQQLDIKGAS SLTGIQESTP NLNFSVQSAG QNVARVTLRG VGTETLVGGG DPGVALHIDG IYVGRNSAAA ADVFDVDRLE VLRGPQGTLY GRNATGGSVN IITKKPTDEL EGSADLTYGN YNEARVRGVI NVPLSDNLYS RITMLSESHD GYIKNLYEGG RDVDDKDSQS GRAQLLYLAD SGDEYLLRGY YSKTGGAGPG SQYLGTDINT ENGYPSAYLI GVSSAGVGGA VLADAFGLAT TATGDSVLPL PTDLHEVRKD APEFTDTLIQ GIDFDASINL SDTLLLKSIT SYQTNDNQIL VDADSSELPL ETRNRNNMAK QYSQEFNLIS QTLGPFQWIL GAYYYHEELT ERFEVITPSG LVPIDTQLGE GAVAGGGGIT QLRIASHEVD STALFAQLSY ELNDEWSVTG GLRYTRDEKT QSREIGGQVD ITNNVQFLSG DIGPLGPDSG TTSFTEPTYR ISTDYELSPD NLLFASYAHG YKSGGYDLNG GEVTDEGEQV PYEPEFVNAI EIGSKNKFFN NKMILNLTAF RYDYEDLQVF RLLATGPVTD NAAQSTIQGV ELELKIEPTD NVKFDGSVGY LDATYDEYSI DIPPTDFSGN RLNYAPEWTG HMGAEYVKTI GEGDLITRVD WSYRSDTYFD RANTDLDMQE AYSLFNARVR YDTEKYYIDL WAKNLTNEDY VTGQVINPPF TCGCRTVNVG APRTYGVTVG ARF
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