| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0282 |
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| Symbol | |
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| ID | 4172915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 327666 |
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| End bp | 329345 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053281 |
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| Product | toxin secretion ABC transporter ATP-binding protein |
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| Protein accession | YP_659868 |
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| Protein GI | 109896613 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.999877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTCCA AAAATATTGA CCTAGTTAAC TTGCGCCAAA CCTTGTTTGC GCTGTTAAAA
CCAGAACGTT CTTTTTTCGC TGTCGTCATC GCTTATAGCG TAGTGATTGG CCTATTGACA
TTAGCTGTGC CAATCGCCGT ACAAACCTTG ATCAACACCA TAGCCAATAT CGCTTCAACG
CGCGCGGTCA TTACCCTTGC CATCGTGTTG TTTAGTACTT TGCTGCTGTC GGGGTGTTTC
GCAGCGCTAC GCATGCGGGT GATGGAGTAT TATGAACGGC GCATCTATGC ACGCTTAGTC
GCTGATCTAA GCTTGCGCAC TATCTTGGCT CCCCATAGCT ACTTTGAGGG CAGCCAAAAC
ACATCAATCA CCCATCGTTA TTTCGACATC ATGACATTGC AAAAGAACGT CCCTAGTTTG
ATGGTTGATG GTATCGCATT GATCTTGCAG ATGATTGTCG GTTTTACTCT GGTTTCTTTT
TATCACCCAT TTCTGCTGGC ATTCAACTTG TGCGTCATTT TAATTATGTA TGCAATCTGG
CGACTCTGGT CAACTCAAGC AAAGGTTACA GCGGTGCGCC TATCTGAGTC TAAGTACACG
ACTGCGAAAT GGTTGAGTAA CTTAGCATCA GCAAACGACT TTTTAAAATC GTCTTCGCAA
TTTGATTATG CAGGCAAAAA AACCGAGCGC TACGTTTCAG AGTATGTGGA TAATCACTCT
CGCCACTTCT CATTCACCTT TAAACAAGTC GTTATGTTTC TGGTGCTTTA CGCACTGGCA
AGCTCGGCTT TGCTTGGTTT AGGTGGTTGG TTGGTCATTA TTGGTCAGTT GTCCATCGGG
CAATTGGTTG CCGCAGAGTT GATTATGGCC GCAGTATTCT TAGGGCTGTC TAACTTCAGT
CATTATTTAA AGTTGTATTA CGAGCTATAT GGCACCGCAG ACAAAATTGG CGGCGCTATC
AACATACCTC AAGAGGCGTT AGAACAAACA TCCAAACCTG CGCCAGCTGG CGGCGCACTT
GATTTCAATA AGGTGATTAT TAAGCGTAAA AGCGAATCAT GCCTTATCGA CAAACAAATC
GCACAAGGGG ATAAATACTT TGTCTCTACT CAGACCAATT GGACCCAGCG CAGCATAGTT
AACTTACTCA AACGCTATGA GGTTCCCTCT TCTGGGTGGA TAAATCTTGA TAATAGCGAC
TTGTCTGATT ACGACACCTA CGATTTACGC CAAGCCGTAT TTGTATTAGA CCGCTCATTA
ATTATCGAAT GTACTATCGA AGAATACATA CACATGTGTG TTCCCGATGT AACCACCAGT
GAGATAAACG CCACCATAGA AAGAGTCGGC TTAGCGGATG TGATCAGTTC GTTGCCGCTA
AAGCTCAAAA CGCCAATTTC GTCGGTAGGC ACACCTTTGC AGCCACTTGA ATTTATCTTA
CTAAAGTTAG TCGTGGTGAT GCTTTCTAAG CCAAAAGTGC TGGTCATCAA CCAGCATTTC
GATGCGATCC CGACCATCAG ACGAGAGCGT ATTTTAGGCG TGATAGAAAG AACAGATCTA
ACCGTATTGT ATTTTTCGAA TGCACCAACG CCGGCATTTT TTAATGGCAT TATTGAGTTA
GAAAGCAAAA AAGAGCCCCA GCCCAATGTA AATACAAGTC AGGAGGCAGA ACATGAGTAA
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| Protein sequence | MSSKNIDLVN LRQTLFALLK PERSFFAVVI AYSVVIGLLT LAVPIAVQTL INTIANIAST
RAVITLAIVL FSTLLLSGCF AALRMRVMEY YERRIYARLV ADLSLRTILA PHSYFEGSQN
TSITHRYFDI MTLQKNVPSL MVDGIALILQ MIVGFTLVSF YHPFLLAFNL CVILIMYAIW
RLWSTQAKVT AVRLSESKYT TAKWLSNLAS ANDFLKSSSQ FDYAGKKTER YVSEYVDNHS
RHFSFTFKQV VMFLVLYALA SSALLGLGGW LVIIGQLSIG QLVAAELIMA AVFLGLSNFS
HYLKLYYELY GTADKIGGAI NIPQEALEQT SKPAPAGGAL DFNKVIIKRK SESCLIDKQI
AQGDKYFVST QTNWTQRSIV NLLKRYEVPS SGWINLDNSD LSDYDTYDLR QAVFVLDRSL
IIECTIEEYI HMCVPDVTTS EINATIERVG LADVISSLPL KLKTPISSVG TPLQPLEFIL
LKLVVVMLSK PKVLVINQHF DAIPTIRRER ILGVIERTDL TVLYFSNAPT PAFFNGIIEL
ESKKEPQPNV NTSQEAEHE
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