Gene Patl_0277 details

Gene Information

• Locus tag: Patl_0277
• ID: 4171956
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 323423
• End bp: 324010
• Gene Length: 588 bp
• Protein Length: 195 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638053276
• Product: pentapeptide repeat-containing protein
• Protein accession: YP_659863
• Protein GI: 109896608
• COG category: [S] Function unknown
• COG ID: [COG1357] Uncharacterized low-complexity proteins

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGGCATTG AATATTACGA TGACGAGATT GGTCATCAAC ACCCTTTAGC CAGTGAAGCT 
TGCTGGGAGA GCATAAGGTT CGAACAGTGC AGGTTCGAAA AGCTTGATTT GAGGGAAGGG 
CAATGGCGCT TTTGTGTATT TGATGAATGT GAATTTGTCG ATTGTGATTT GTCGCTGCTG 
GCATTGAACA ATAGCCAGTT TCACAGTGCC ATTTTTATTC GCTGTAAATT ATTGGCAGTT 
GACTGGACGC AAGCAGATTG GACTAGTCAT TTGGGAAACC CGCCAAAATT TAAAGACTGC 
ATACTCAACT CCGGCTCTTT TTTTGGCTTG GCTCTGGGGG CTATACAGCT TATTGATTGC 
AAAGTGCATG ATGTCGACTT TACCCAAGCC AGTTTGCGTA AAGCGCGTTT TGTAGGCAGT 
GAGCTAGATC AAAGCCGCTT TCATAATACG ACTTTGACTT CAGCTGATTT CACCCAAGCC 
CAGGGTTATC AAATAGATTT AAGGCAAAAT CGTGTAGATA AGGCACGCTT TTCTCGCGTT 
GAGGCGTTGG GGTTGTTAGC AGCATTAGGG ATTGAGTTAG TAGACTAA 

 

Protein sequence

MGIEYYDDEI GHQHPLASEA CWESIRFEQC RFEKLDLREG QWRFCVFDEC EFVDCDLSLL 
ALNNSQFHSA IFIRCKLLAV DWTQADWTSH LGNPPKFKDC ILNSGSFFGL ALGAIQLIDC 
KVHDVDFTQA SLRKARFVGS ELDQSRFHNT TLTSADFTQA QGYQIDLRQN RVDKARFSRV 
EALGLLAALG IELVD