| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0275 |
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| Symbol | |
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| ID | 4171954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 321604 |
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| End bp | 322287 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053274 |
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| Product | haloacid dehalogenase, type II |
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| Protein accession | YP_659861 |
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| Protein GI | 109896606 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCATG CGGCCCCAAA ACCTAAAGTT ATTATTTTCG ATGTAAACGA AACCCTTCTC
GATTTAGAAA CCATGCGCAC CTCAGTCGGT AAGGCCTTAG ATGGTCAAGA AGAGCTAACA
ACTTTATGGT TTTCAACCAT GTTGCATCAT TCGCTAGTGA CCACAGTAAC CGGTGACTAC
CAAGACTTTG GTAAAATTGG CGTAGCGGCG TTAATGATGG TGGCGCAAAA CAACAATATC
GACATTACCG AAGAGCAAGC CGTAACCGCG ATTAAAACGC CCTTACTATC TCTGCCCGCT
CACCCTGATG TTAAAGCGGG GTTGACTGCC CTTAAAGCGC AAGGATTCAA AATTGTCAGT
TTGACCAACT CGTCTAACAA AGGTGTTGAG ACCCAGTTCA AAAATGCGGG TTTAACGGAT
TATTTCGATA AGCGCATGAG CATTGAAGAC ATTAAAGTTT ACAAACCTGA TCTGCGTTCA
TATGCATGGG CACTTGAACA ACTGAATATT AAACCTGAAG AGGCGCTAAT GGTTGCTGCC
CACGGTTGGG ATGTCGCTGG TGCTAAAGCG GCAGGGTTAC AAACCGCTTT TGTTGCGCGC
CCAGGCAAAG CGCTTTATCC GTTGGCACAA GAGCCAGACT ATATCGTAAA AGATTTAAGC
GAATTGGTTG AAATACTAAA GTAA
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| Protein sequence | MAHAAPKPKV IIFDVNETLL DLETMRTSVG KALDGQEELT TLWFSTMLHH SLVTTVTGDY
QDFGKIGVAA LMMVAQNNNI DITEEQAVTA IKTPLLSLPA HPDVKAGLTA LKAQGFKIVS
LTNSSNKGVE TQFKNAGLTD YFDKRMSIED IKVYKPDLRS YAWALEQLNI KPEEALMVAA
HGWDVAGAKA AGLQTAFVAR PGKALYPLAQ EPDYIVKDLS ELVEILK
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