| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0272 |
|---|
| Symbol | |
|---|
| ID | 4171951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 318844 |
|---|
| End bp | 319689 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638053271 |
|---|
| Product | thioredoxin domain-containing protein |
|---|
| Protein accession | YP_659858 |
|---|
| Protein GI | 109896603 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3118] Thioredoxin domain-containing protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0149418 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATA GCGTAGATAT TACCATTGAG AATTTTCAGC AAGTCATCTT ACAAGAATCC
GCCACCAAAT TGGTTATGGT TGAGTTTTGG GCCCAAGGTT ATGAGCCTAG TGAGCAACTA
GCGCCAGTAT TGCAAGCGAT TGCGAGCAAA CAAGGTGAAA ATCTATTGCA TGCTCGAGTG
GATTGTCAGG CACAGCCAGA TATTACGGCG CAATTTGGCG TGCAAAACTT GCCTACGGTT
ATGTTGATTA AAGATGGCCA ACCTGTTGAC GGCTTCGCCG GTGTTGAAAG TGAAGCGAAT
ATTCAAGCCA TGTTAGATAA ACACTTGCCT AAGCCTCAAG ACGAATTATT TGCCCAAGCC
ACAGCCATGG CAGAGCAAGC TAATTACCAA GAAGCGTTTA CCCTTGTAAA GCAGGCGTTC
GATTTGGACC CTAACCGCGC TGATATTAAG TTGCTATTGG CGGATTGCCA AGTAGAAGTA
GGCCAGGTGA ATCAAGCCAA GGAATTATTA GCGACCATTG GCTTGGTGGA TCAAGACGGA
TATTACCGTG CTATTTTAGG TAAAATTGAA TTGGCCGAGC AAGCCGCTGA GTCCCCCGAA
ATTATTGCTT TGCAGCAAGC ACTGGAAAGC GACCCAGACA ACTTAGATTT AAAAGTAAAA
TTAGCAGTAC AATTGCGTCA AGCCAATCAG ATCGAAGAAG CATTGGGTTT AATGCACTCT
GTATTGTTAA AAGACCTGAA CTTTCAAGAT GCTAAAAAAT TAATGCTAGA TATGATCAAC
GCGCTGCCAG ATGGTGAGCC TCTTAAATCT CAATATCGCC GTAAGGTGTA TAGTCTGCTT
TATTAA
|
|---|
| Protein sequence | MQNSVDITIE NFQQVILQES ATKLVMVEFW AQGYEPSEQL APVLQAIASK QGENLLHARV
DCQAQPDITA QFGVQNLPTV MLIKDGQPVD GFAGVESEAN IQAMLDKHLP KPQDELFAQA
TAMAEQANYQ EAFTLVKQAF DLDPNRADIK LLLADCQVEV GQVNQAKELL ATIGLVDQDG
YYRAILGKIE LAEQAAESPE IIALQQALES DPDNLDLKVK LAVQLRQANQ IEEALGLMHS
VLLKDLNFQD AKKLMLDMIN ALPDGEPLKS QYRRKVYSLL Y
|
|---|
| |