| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0260 |
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| Symbol | |
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| ID | 4174007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 303017 |
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| End bp | 304756 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053259 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_659846 |
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| Protein GI | 109896591 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0729] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTCACTT TACGGACGGT TCAATTATCT TTTTCTTGGT TGATCGCACT TCTCGTGCTT
GTTGCCCCTC ACGTTTTGGC GATGTCGGTT GATATTGAAG GAGCAGATGA CAGTCGTTTA
GAAGAGAATA TTGAGACACA TATTGGCATC ATTGGTGCCC CAGTGGGGTG TGAGCTTACG
CCAAACTATC GCCAAACTGT TAAAGAAGCG GTAATTAAAG CGGCTCAAGC AATTGGCTAT
TATCAGCTTG AAACCTTAAG TATACGTTTA TCAAAAGACC AAGAGTGCAG CGAGTTATAC
CTCTCAGTAC GAGCTGGCAC GCGTGTAAAA ATTAGTCAGC GTCAAATAGA GCTAGTTGGA
TCTGAAAAGC CAGACACGGT ATTGCAAGGC GTTATTGATA AAGCCCAGCT TAAAGAAGGT
ACGTTCTTAG AGCAAAGTCA GTATGAAAGC CTAAAAAGCA AGCTGTTGTC TATGGCACAA
GTGCGCGGCT ATTTTGATGC GAAATTTACC ACCCAAGAAA TTCGTATCGA CTTCGATGCT
TACTCGGCAA GTATTCACTT AGTCTTTGCT GCAGGTAAGC GGTATGCCTT CGGTAAGCTG
CTCATTCCAG AAGACGACAA AGCGCAAGTC CTTATCCAAG AAGTATCGAC CTTTAAAGAA
GGTGAGCCTT ACCACGCAGA TAAACTAGCG GAATTTAACC AAAATTTAAA ACTCACAGGC
TATTTTCAAC AAGTTGTGGC GCGTCCGCTC GTCAGTAAAG CACAAGGCGG TGAAGTACCC
ATTGAATTGA TTGCCAGCGC CAAGCCCAGA GACACATTTA ACATAGGCGG AGGTATTTCT
ACGGATACTG GCCCCAGCCT TCGATTTAAA TGGCAGCGCC CTTGGGTTAA CAGCAAGGGG
CATAGTTTGT CAGCTGACGC ATTTATCTCA AGCCCAGAGC AAAACATCAG TGTGAAGTAC
AAAGTGCCGC TTGAGGACCC ACTGAATAAT TATTTGAGTT ATCAAGCGGG TCTTAAAGCC
GAAAATGACA ATGATACGCA AAGTGAAGTG ATTACTCTGG CCATTCAGCG CCATTGGGGC
GAGCCTGATA ACGATTGGAA ACGTATTGGA TTCTTACGTT TAGAACAAGA AAAATTCACT
CAGGGAACTG AAGATGAACA AACCACCACG TTATTGTTGC CCGGTGTCAC TGTGAGCCGG
CGAAGAACGC GCGGTGGGTT AGACCTCAAT TGGGGGGATA AACAGCAATA CACCCTAGAG
GGCGCCACCC AAGAGGTGGT TTCTGATATC GATTTGGTGC GTATCAGTTT GCAATCTAAA
TGGTTGCGTT CCTATGGAAA ACATCGCTTA TTCGCTCGGG CAGAATTGGG GGCTATTGCG
ACCAATGACT TCTCTCAAGT GCCATCGAGT TTGCGCTATT TCGCAGGGGG AGATCAAAGC
GTACGAGGAT TTGCCCTAAA TACATTGTCG CCAGAAGAAG ACGATGAATT AACCGGCGGG
CAATATTTGA GTGTGGCGAG TATCGAGTAT TCCTACCCAG TGGCAACCGA TTGGCGCTTA
GCTGTTTTTA CGGATGTGGG TAATGCAAGT GATAAACCAT TTAAAGATCT CGCCACCGGT
GTTGGCTTAG GCGCTAGCTG GGTTTCACCT GTTGGACCAA TACGTTTTTA TTTTGCGCGA
GGTAACAGTG TGGAAGAAAC CACATGGCGC TTTCATTTTT CCATGGGGCC TGCATTATGA
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| Protein sequence | MFTLRTVQLS FSWLIALLVL VAPHVLAMSV DIEGADDSRL EENIETHIGI IGAPVGCELT
PNYRQTVKEA VIKAAQAIGY YQLETLSIRL SKDQECSELY LSVRAGTRVK ISQRQIELVG
SEKPDTVLQG VIDKAQLKEG TFLEQSQYES LKSKLLSMAQ VRGYFDAKFT TQEIRIDFDA
YSASIHLVFA AGKRYAFGKL LIPEDDKAQV LIQEVSTFKE GEPYHADKLA EFNQNLKLTG
YFQQVVARPL VSKAQGGEVP IELIASAKPR DTFNIGGGIS TDTGPSLRFK WQRPWVNSKG
HSLSADAFIS SPEQNISVKY KVPLEDPLNN YLSYQAGLKA ENDNDTQSEV ITLAIQRHWG
EPDNDWKRIG FLRLEQEKFT QGTEDEQTTT LLLPGVTVSR RRTRGGLDLN WGDKQQYTLE
GATQEVVSDI DLVRISLQSK WLRSYGKHRL FARAELGAIA TNDFSQVPSS LRYFAGGDQS
VRGFALNTLS PEEDDELTGG QYLSVASIEY SYPVATDWRL AVFTDVGNAS DKPFKDLATG
VGLGASWVSP VGPIRFYFAR GNSVEETTWR FHFSMGPAL
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