| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0235 |
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| Symbol | |
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| ID | 4171722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 278669 |
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| End bp | 279277 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638053234 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_659821 |
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| Protein GI | 109896566 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTCGCA TACAACGTGG TTTCACCTTA TTAGAGGTGA TGTTGGTGTT AGTTATCATG
GGGCTTTTGG CGGGCACTGT GGTGTTCAAT ATCAGTGGTC AAAGTGGGCA AGACAGGCTT
AAACAGCAAG TACAACGCTT TCAAGTCGTG TTTAGTATGG CCTCAGATTA CGCAGTGCTG
AACCAACAAC AGCTTGGTTT GTATGTAGAT GAAGACAAAA GCCAATACAG CTTTGTGATG
TTGGATGAGG AGCAAAACTG GCAGCTTATA TCTGGTGATA AAACCTTTGA AGCGCATACC
TTGCCTGATG AGTTCACCTT TGAATTAGCG TTAAACGATC TGCCTTGGGA TACTGACGAC
AGCTTGTTTA ATGAGTCATC TATCGATGCT GAATTGTCTT TCAGTGATGA TGAAATAAGT
ATCGGTGATG AAGAAGAGAA AAAATTGCCG CCTCCTCAAG TGTTTTTATT GTCCAGCGGT
GATATCACCC CGTTTTCACT GGCATTTTCC TTTGAGCCTG ATTTTTCGTC TGAAGCTGCC
AGTTATTTTC GAGTAAATGT ACAAGATTCT CTGCCGGTTG CGGTAGAAGG GCCGTTGGAA
AATTTATGA
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| Protein sequence | MTRIQRGFTL LEVMLVLVIM GLLAGTVVFN ISGQSGQDRL KQQVQRFQVV FSMASDYAVL
NQQQLGLYVD EDKSQYSFVM LDEEQNWQLI SGDKTFEAHT LPDEFTFELA LNDLPWDTDD
SLFNESSIDA ELSFSDDEIS IGDEEEKKLP PPQVFLLSSG DITPFSLAFS FEPDFSSEAA
SYFRVNVQDS LPVAVEGPLE NL
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