| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_3166 |
|---|
| Symbol | |
|---|
| ID | 4114964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 3178140 |
|---|
| End bp | 3179888 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638037932 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_645884 |
|---|
| Protein GI | 108805947 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGAGA GGACCGCCGC GTTCCGCCTG ATCACCGGCC CCGAGGGGCT GCGCGAGGCC
GCCCGGGCGC TCGCCGGGGC GCGGCGGGTG GGGCTGGACA TCGAGGCGAC GGGGCTCTCC
CCGCTGGACG CCCGGATGCG CCTGCTGCAG CTGGCCGCGG GTGGAGAGAC GTTCGTGGTG
GACGTCTTCG AGGTCAAGGA CCTCTCTCCC CTGCGGGAGG CGCTGGAGGG CGGGCCGCTG
AAGGTGCTCC ACAACGCCAA GTACGACTAC TCCTTCCTGC TCGCCCAGCA CGGCATCCGC
CTCTCGCCGC TGTTCGACAC GATGCTCGCG GCGCAGCTTC TGGACGGCGG CGAGCAGGGC
CCCTCCTACT CCCTGGAGGC GGTGGCCGGG CGCTACCTGC AGGAGACGGT GGACAAGACG
GCGCGCCGGG AGGACTGGTC CAAAGAGCTC AGCCGCGAGC AGCTGGAGTA CGCCGCGCGG
GACGCCGCCA TCCTGCTGCC GCTCCACGAG CGGCTGCAGG AGCTGCTGGA GCGGGAGGGG
CTCGGGCCGG TCTCCCGGAT AGAGTTCGGG GCGGTGCCCG CCATCGCGGA GATGGAGCTC
GCCGGGATAA GGCTCGACGT GCGGCGGTGG CGGGAGCTGG AGAGGGTCGT CCGGCGGCGG
CGCGACGAGG CGGCGCGCCG CCTGGAGTCC CACTTCCCGC AGCCGGAGGG GGTGCTCCCG
CTCGAGGGTC TCGGGCCGCG CCTGAACCTG AACAGCCCCC AGCAGATCAT GGAGGCCTTC
CGCTCCATAG GGATAGAGCT TCCGGACACC CGGATGTGGA CGCTGCTGAC GGTGGACCAC
CCGGCGGCCC GGGACCTGCT GGAGTACCGC GAGCTGCAGA AGAAGCTCGG CACCTACCTG
GAGACCTACG AGGGCTTTGT TCACCCGAAG ACCGGCAGGA TCCACGCGAG CTTCCTGCAG
TGCCGGGTGC CAACCGGGCG GCTGGCCTGC ACCAACCCCA ACGTGCAGCA GATCCCCCAC
GAGGACGAGT TCCGCCGCTG CTTCGTCGCC GGGGAGGGGA ACGTCCTGGT GATCGCCGAC
TACTCGCAGA TAGAGCTGCG GATACTGGCC GAGGTCTCCG GCGACCCGGG CTTCGTGGAG
GCCTTCCGGC GGGGCGAGGA CCTGCACCGG GTGACGGCGG CGACGATGTT CGGGGTGCCA
AAGGAGGAGG TCACCAAAGA GCAGCGCTCG GCGGCCAAGC GCATCAACTT CGGGCTGGCC
TACGGGCGCG GCCCGCGCAG CCTGGCGGCC CAGCTGGGGA CCGACGAGGA GCGCGCCCGC
AGGCTCATCG ACGAGTACTT CGCGACCTAC GGCCGGGTGC AGCGCTACCT GAACGAGACG
GCGAACCGCG CCCTGAAGGA GGGCGCGCTG CGCACCCTCT CCGGGCGGCT GCGCAAGTTC
GGCCGCACGA GGGGCCTGAG CAGCGCGGAG CGGGGCGCCC TCAAGCGGGA GGCGATGAAC
TACCCCATCC AGGGCACCAG CGCGGACATC GCGAAGCTGG CCCTGATCTT TATCCACTCG
GAGCTGAGAG ACCTCGACGC CCGCCTGATC AACTGCATCC ACGACGAGTT CGTGGTCGAG
TGCGCCGAAG AACAGGCGGA GGAGGCGGCC TCCCGGGTGC GCTCGGCGAT GGTCCGGGCG
GGCGAGCGGC TGCTGAAGCG GGTGCCGGTG GAGGTGGAGG TGGCCGTCTC CCGGGAGTGG
AGGAAGTAG
|
|---|
| Protein sequence | MEERTAAFRL ITGPEGLREA ARALAGARRV GLDIEATGLS PLDARMRLLQ LAAGGETFVV
DVFEVKDLSP LREALEGGPL KVLHNAKYDY SFLLAQHGIR LSPLFDTMLA AQLLDGGEQG
PSYSLEAVAG RYLQETVDKT ARREDWSKEL SREQLEYAAR DAAILLPLHE RLQELLEREG
LGPVSRIEFG AVPAIAEMEL AGIRLDVRRW RELERVVRRR RDEAARRLES HFPQPEGVLP
LEGLGPRLNL NSPQQIMEAF RSIGIELPDT RMWTLLTVDH PAARDLLEYR ELQKKLGTYL
ETYEGFVHPK TGRIHASFLQ CRVPTGRLAC TNPNVQQIPH EDEFRRCFVA GEGNVLVIAD
YSQIELRILA EVSGDPGFVE AFRRGEDLHR VTAATMFGVP KEEVTKEQRS AAKRINFGLA
YGRGPRSLAA QLGTDEERAR RLIDEYFATY GRVQRYLNET ANRALKEGAL RTLSGRLRKF
GRTRGLSSAE RGALKREAMN YPIQGTSADI AKLALIFIHS ELRDLDARLI NCIHDEFVVE
CAEEQAEEAA SRVRSAMVRA GERLLKRVPV EVEVAVSREW RK
|
|---|
| |